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722ab55e52
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
21 lines
995 B
Text
21 lines
995 B
Text
STAR aligns short and long RNA-seq reads to a reference genome using
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uncompressed suffix arrays, resulting in fast, accurate mapping.
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STAR is capable of unbiased de novo detection of canonical splice
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junctions, can discover non-canonical splices and chimeric (fusion)
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transcripts and can map full-length RNA sequences. Comes with
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STARsolo for: mapping, demultiplexing and gene quantification for
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single cell RNA-seq (See STARmanual).
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The make command for building the program assumes that the cpu is
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supporting AVX extensions, included in intel processors since Sandy
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Bridge (2008) and in AMD cpus since Bulldozer (2011). See the
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Slackbuild if other processors can be supported.
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Reference: https://www.ncbi.nlm.nih.gov/pubmed/23104886
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LIMITATIONS
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This release was tested with the default parameters for human and
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mouse genomes. Mammal genomes require at least 16GB of RAM, ideally
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32GB. Please contact the author for a list of recommended parameters
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for much larger or much smaller genomes.
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