mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-29 13:00:32 +01:00
31 lines
1.6 KiB
Text
31 lines
1.6 KiB
Text
The MEME suite: motif based sequence analysis tools
|
|
|
|
The MEME Suite allows the biologist to discover novel motifs in
|
|
collections of unaligned nucleotide or protein sequences, and to perform
|
|
a wide variety of other motif-based analyses. The Suite supports motif-
|
|
based analysis of DNA, RNA and protein sequences. It provides motif
|
|
discovery algorithms using both probabilistic (MEME) and discrete models
|
|
(MEME), which have complementary strengths. It also allows discovery of
|
|
motifs with arbitrary insertions and deletions (GLAM2). In addition to
|
|
motif discovery, the MEME Suite provides tools for scanning sequences
|
|
for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters
|
|
of motifs (MCAST), comparing motifs to known motifs (Tomtom), finding
|
|
preferred spacings between motifs (SpaMo), predicting the biological
|
|
roles of motifs (GOMo), measuring the positional enrichment of sequences
|
|
for known motifs (CentriMo), and analyzing ChIP-seq and other large
|
|
datasets (MEME-ChIP).
|
|
|
|
Check README.TESTS for runing the recommended tests on the compiled
|
|
executables. Here, the tests *FAIL* on a 32bit system!
|
|
|
|
Check README.DATABASES for more info or if you want to install
|
|
meme-suite without the databases present at build time.
|
|
|
|
To cite the full MEME suite:
|
|
Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin Frith, Charles
|
|
E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William S. Noble,
|
|
"MEME SUITE: tools for motif discovery and searching", Nucleic Acids
|
|
Research, 37:W202-W208, 2009.
|
|
|
|
To cite individual tools, please check the citation page:
|
|
http://meme-suite.org/doc/cite.html
|