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26 lines
1.3 KiB
Text
26 lines
1.3 KiB
Text
SeaView is a multiplatform, graphical user interface for multiple
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sequence alignment and molecular phylogeny. Features:
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- Reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
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PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic
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trees.
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- Drives programs muscle or Clustal Omega for multiple sequence
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alignment, and also allows to use any external alignment
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algorithm able to read and write FASTA-formatted files.
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- Drives the Gblocks program to select blocks of evolutionarily
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conserved sites.
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- Computes phylogenetic trees by parsimony, using PHYLIP's dnapars /
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protpars algorithm, distance, with NJ or BioNJ algorithms on a variety
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of evolutionary distances, maximum likelihood, driving program PhyML
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- Can use the Transfer Bootstrap Expectation method to compute the
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bootstrap support of PhyML and distance trees.
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- Uses the Treerecs method to reconcile gene and species trees.
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- Prints and draws phylogenetic trees on screen, SVG, PDF or PostScript
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files.
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- Allows to download sequences from EMBL / GenBank / UniProt.
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For details and citation:
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Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a
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multiplatform graphical user interface for sequence alignment and
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phylogenetic tree building. Molecular Biology and Evolution
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27(2):221-224.
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