mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-24 10:02:29 +01:00
126 lines
4 KiB
Bash
126 lines
4 KiB
Bash
#!/bin/sh
|
|
|
|
# Slackware build script for genpak
|
|
# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
|
|
# hereby submitted to the public domain
|
|
|
|
# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
|
|
# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
|
|
# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
|
|
|
|
PRGNAM=genpak
|
|
VERSION=${VERSION:-0.26}
|
|
BUILD=${BUILD:-3}
|
|
TAG=${TAG:-_SBo}
|
|
|
|
if [ -z "$ARCH" ]; then
|
|
case "$( uname -m )" in
|
|
i?86) ARCH=i486 ;;
|
|
arm*) ARCH=arm ;;
|
|
*) ARCH=$( uname -m ) ;;
|
|
esac
|
|
fi
|
|
|
|
CWD=$(pwd)
|
|
TMP=${TMP:-/tmp/SBo}
|
|
PKG=$TMP/package-$PRGNAM
|
|
OUTPUT=${OUTPUT:-/tmp}
|
|
|
|
if [ "$ARCH" = "i486" ]; then
|
|
SLKCFLAGS="-O2 -march=i486 -mtune=i686"
|
|
LIBDIRSUFFIX=""
|
|
elif [ "$ARCH" = "i686" ]; then
|
|
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
|
|
LIBDIRSUFFIX=""
|
|
elif [ "$ARCH" = "x86_64" ]; then
|
|
SLKCFLAGS="-O2 -fPIC"
|
|
LIBDIRSUFFIX="64"
|
|
else
|
|
SLKCFLAGS="-O2"
|
|
LIBDIRSUFFIX=""
|
|
fi
|
|
|
|
set -e
|
|
|
|
rm -rf $PKG
|
|
mkdir -p $TMP $PKG $OUTPUT
|
|
cd $TMP
|
|
rm -rf gp-$VERSION
|
|
tar xvf $CWD/gp-$VERSION.tgz
|
|
cd gp-$VERSION
|
|
chown -R root:root .
|
|
find . \
|
|
\( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
|
|
-exec chmod 755 {} \; -o \
|
|
\( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
|
|
-exec chmod 644 {} \;
|
|
|
|
# Use our CFLAGS
|
|
sed -i "/^CFLAGS/s/=/+=/" Makefile
|
|
|
|
# Correct libdir
|
|
sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" Makefile
|
|
sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" src/genpak.c
|
|
sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" src/genpak.h
|
|
|
|
CFLAGS="$SLKCFLAGS" \
|
|
CXXFLAGS="$SLKCFLAGS" \
|
|
make
|
|
|
|
# Makefile does not support "make DESTDIR install". So...
|
|
cd ./src
|
|
install -D -m755 gp_acc $PKG/usr/bin/gp_acc
|
|
install -D -m755 gp_adjust $PKG/usr/bin/gp_adjust
|
|
install -D -m755 gp_cdndev $PKG/usr/bin/gp_cdndev
|
|
install -D -m755 gp_cusage $PKG/usr/bin/gp_cusage
|
|
install -D -m755 gp_digest $PKG/usr/bin/gp_digest
|
|
install -D -m755 gp_dimer $PKG/usr/bin/gp_dimer
|
|
install -D -m755 gp_findorf $PKG/usr/bin/gp_findorf
|
|
install -D -m755 gp_gc $PKG/usr/bin/gp_gc
|
|
install -D -m755 gp_getseq $PKG/usr/bin/gp_getseq
|
|
install -D -m755 gp_matrix $PKG/usr/bin/gp_matrix
|
|
install -D -m755 gp_mkmtx $PKG/usr/bin/gp_mkmtx
|
|
install -D -m755 gp_pars $PKG/usr/bin/gp_pars
|
|
install -D -m755 gp_pattern $PKG/usr/bin/gp_pattern
|
|
install -D -m755 gp_primer $PKG/usr/bin/gp_primer
|
|
install -D -m755 gp_qs $PKG/usr/bin/gp_qs
|
|
install -D -m755 gp_randseq $PKG/usr/bin/gp_randseq
|
|
install -D -m755 gp_scan $PKG/usr/bin/gp_scan
|
|
install -D -m755 gp_seq2prot $PKG/usr/bin/gp_seq2prot
|
|
install -D -m755 gp_shift $PKG/usr/bin/gp_shift
|
|
install -D -m755 gp_slen $PKG/usr/bin/gp_slen
|
|
install -D -m755 gp_tm $PKG/usr/bin/gp_tm
|
|
install -D -m755 gp_trimer $PKG/usr/bin/gp_trimer
|
|
|
|
cd ../data
|
|
install -D -m644 ecoli.mtx $PKG/usr/lib${LIBDIRSUFFIX}/genpak/ecoli.mtx
|
|
install -D -m644 enzyme.enz $PKG/usr/lib${LIBDIRSUFFIX}/genpak/enzyme.enz
|
|
install -D -m644 myco.cdn $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco.cdn
|
|
install -D -m644 myco.mtx $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco.mtx
|
|
install -D -m644 myco0 $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco0
|
|
install -D -m644 sample.seq $PKG/usr/lib${LIBDIRSUFFIX}/genpak/sample.seq
|
|
install -D -m644 standard.cdn $PKG/usr/lib${LIBDIRSUFFIX}/genpak/standard.cdn
|
|
install -D -m644 mporfs.seq $PKG/usr/lib${LIBDIRSUFFIX}/genpak/mporfs.seq
|
|
|
|
# Put man pages to their proper place
|
|
mkdir -p $PKG/usr/man/man1
|
|
cp ../man1/* $PKG/usr/man/man1
|
|
cd ..
|
|
|
|
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
|
|
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
|
|
|
|
find $PKG/usr/man -type f -exec gzip -9 {} \;
|
|
for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
|
|
|
|
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
|
|
cp -a \
|
|
html CHANGES.TXT INSTALL.TXT LICENSE.TXT README.TXT \
|
|
$PKG/usr/doc/$PRGNAM-$VERSION/
|
|
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
|
|
|
|
mkdir -p $PKG/install
|
|
cat $CWD/slack-desc > $PKG/install/slack-desc
|
|
|
|
cd $PKG
|
|
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
|