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94 lines
4.1 KiB
Text
94 lines
4.1 KiB
Text
The EMBASSY package includes the following:
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DOMAINATRIX Previous distributions of the protein domain programs from
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Jon Ison's group were in a single EMBASSY package. This is now split
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into 5 packages according to function.
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Application details and documentation for DOMAINATRIX
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DOMAINATRIX is available as a Beta release 0.1.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMAINATRIX-0.1.0.tar.gz
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Application details and documentation for DOMALIGN
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DOMALIGN is available as a Beta release 0.1.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMALIGN-0.1.0.tar.gz
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Application details and documentation for DOMSEARCH
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DOMSEARCH is available as a Beta release 0.1.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMSEARCH-0.1.0.tar.gz
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Application details and documentation for SIGNATURE
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SIGNATURE is available as a Beta release 0.1.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file SIGNATURE-0.1.0.tar.gz
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Application details and documentation for STRUCTURE
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STRUCTURE is available as a Beta release 0.1.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file STRUCTURE-0.1.0.tar.gz EMNU
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(EMBOSS Menu is Not UNIX) Application details and documentation for EMNU
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EMNU is available as release 1.05 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file EMNU-1.05.tar.gz ESIM4
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(EMBOSS version of SIM4) Application details and documentation for ESIM4
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ESIM4 is available as release 1.0.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file ESIM4-1.0.0.tar.gz HMMER
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(EMBOSS version of HMMER 2.1.1 - PLEASE USE HMMERNEW) Application details
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and documentation for HMMER
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HMMER is available as release 2.1.1 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file HMMER-2.1.1.tar.gz HMMERNEW
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(EMBOSS version of HMMER 2.3.2) Application details and documentation
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for HMMERNEW
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HMMER 2.3.2 is available from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file HMMER-2.3.2.tar.gz
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MEME (previous EMBOSS version of MEME 2.3.1) Application details and
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documentation for MEME
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MEME is available as release 2.3.1 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file MEME-2.3.1.tar.gz MEMENEW
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(EMBOSS version of MEME 3.0.14) Application details and documentation
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for MEMENEW which wraps release 3.0.14 of the Meme package
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MEMENEW is available as release 0.1.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file MEMENEW-0.1.0.tar.gz
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MSE (A Multiple Sequence Screen Editor for Biological Sequences.)
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Application details and documentation for MSE
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MSE is available as release 1.0.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file MSE-1.0.0.tar.gz MYEMBOSS
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(For sites to build their own applications) Application details and
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documentation for MYEMBOSS
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MYEMBOSS provides a directory structure and makefile stubs for developing
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your own applications more easily than in versions before 3.0.0.
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MYEMBOSS requires autoconf, automake and libtool to be installed. See
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the INSTALL file for more informations.
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MYEMBOSS is available as release 1.0.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file MYEMBOSS-1.0.0.tar.gz PHYLIP
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(Phylogeny Inference Package) Application details and documentation for
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PHYLIP and PHYLIPNEW.
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PHYLIP 3.572 was available as an EMBASSY package with previous
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releases. From 3.0.0 we are including a beta test conversion of PHYLIP
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3.61 (PHYLIPNEW). Program names now begin with 'f' rather than 'e'
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and interfaces are more EMBOSS-like. Please pass on feedback to our bug
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reporting list emboss-bug@emboss.open-bio.org
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PHYLIPNEW is available as a Beta release 3.6b from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file PHYLIP-3.6b.tar.gz TOPO
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(Transmembrane display) Application details and documentation for TOPO
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TOPO is available as release 1.0.0 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file TOPO-1.0.0.tar.gz Vienna
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RNA package Application details and documentation for VIENNA
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Vienna is available as release 1.6 from our FTP server
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ftp://emboss.open-bio.org/pub/EMBOSS/ in file VIENNA-1.6.tar.gz
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