D Woodfall 01d7a53483 academic/CAFS_divergence: Fix ARCH section. ... Signed-off-by: bedlam <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2023-05-20 11:17:57 +07:00
..
3D-ICE	academic/3D-ICE: Added (Thermal Emulator Library).	2022-12-03 11:30:33 +07:00
abntex
aenig4
aeskulap
aline
aliview
AlphaPlot
amd	academic/amd: Align with template.	2023-05-20 11:17:28 +07:00
amplicon
amplifx	academic/amplifx: Fix ARCH section.	2023-05-20 11:17:57 +07:00
antiprism
archaeopteryx
aris
arka
armadillo
arpack
arpack-ng	academic/arpack-ng: Align with template.	2023-05-20 11:17:28 +07:00
artha
avl
avogadroapp
avogadrolibs	academic/avogadrolibs: Add VTK as optional dependency.	2023-04-15 07:15:24 +07:00
bcftools	academic/bcftools: Updated for version 1.17.	2023-04-15 07:15:39 +07:00
bedGraphToBigWig
bedtools
biblesync
bibletime
bibus
biopython	academic/biopython: Updated for version 1.81.	2023-04-22 11:38:31 +07:00
boinc	academic/boinc: Fix rc.boinc variables, remove extraneous characters	2023-05-13 19:27:30 +07:00
bowtie	academic/bowtie: Updated for version 1.3.1.	2022-10-15 10:47:26 +07:00
bowtie2	academic/bowtie2: Updated for version 2.5.1.	2023-04-15 07:15:38 +07:00
bowtie2-legacy
bpp-core
bpp-phyl
bpp-phyl-omics
bpp-popgen
bpp-seq
bpp-seq-omics
bpp1.9-numcalc
bpp1.9-phyl
bpp1.9-seq
bpp1.9-utils
bppsuite
btf	academic/btf: Align with template.	2023-05-20 11:17:28 +07:00
bwa
cadabra2	academic/cadabra2: Update REQUIRES.	2023-04-29 18:11:43 +07:00
CAFS_divergence	academic/CAFS_divergence: Fix ARCH section.	2023-05-20 11:17:57 +07:00
calc	academic/calc: Updated for version 2.14.1.3.	2023-04-22 11:38:33 +07:00
calcoo
camd	academic/camd: Align with template.	2023-05-20 11:17:28 +07:00
cap3
CAPS_coevolution	academic/CAPS_coevolution: Fix ARCH section.	2023-05-20 11:17:57 +07:00
cblas	academic/cblas: Align with template.	2023-05-20 11:17:28 +07:00
ccolamd	academic/ccolamd: Align with template.	2023-05-20 11:17:29 +07:00
cdo	academic/cdo: Updated for version 2.2.0.	2023-05-20 11:17:24 +07:00
celestia
chartgeany
chemtool
cholmod	academic/cholmod: Align with template.	2023-05-20 11:17:29 +07:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS
cistrome-mdseqpos	academic/cistrome-mdseqpos: Fix deps.	2022-11-12 22:33:12 +07:00
clark-ugene
cld2
clustalo
clustalw
clustalx
colamd	academic/colamd: Align with template.	2023-05-20 11:17:29 +07:00
colin	academic/colin: Use template TMP assignment.	2023-05-20 11:17:27 +07:00
convertall
copasi	academic/copasi: Updated for version 4.39.272.	2023-02-04 07:19:52 +07:00
cryptominisat	academic/cryptominisat: Updated for version 5.11.3.	2022-10-15 10:47:22 +07:00
csparse	academic/csparse: Align with template.	2023-05-20 11:17:29 +07:00
cufflinks
cutadapt
cvc4
cxsparse	academic/cxsparse: Align with template.	2023-05-20 11:17:29 +07:00
dakota	academic/dakota: Updated for version 6.17.0.	2023-01-28 08:23:05 +07:00
Data2FCS
datamash
DendroPy
diamond
dimod	academic/dimod: Added (A shared API for samplers)	2022-11-12 22:32:58 +07:00
DRAMPower	academic/DRAMPower: Fix github tarball handling.	2022-11-26 09:11:46 +07:00
DRAMSim2	academic/DRAMSim2: Added (A cycle accurate DRAM simulator)	2022-10-15 10:47:28 +07:00
DRAMsim3	academic/DRAMsim3: Fix github tarball handling.	2022-11-05 21:15:16 +07:00
DRAMSys	academic/DRAMSys: Fix github tarball handling.	2023-01-07 08:13:28 +07:00
ds9	academic/ds9: Updated for version 8.4.1.	2023-02-04 07:19:56 +07:00
dwave-cloud-client	academic/dwave-cloud-client: Added (REST interface for D-Wave API)	2022-11-12 22:32:58 +07:00
dwave-greedy	academic/dwave-greedy: Added (steepest descent solver for (BQM))	2022-11-12 22:32:58 +07:00
dwave-hybrid	academic/dwave-hybrid: Added (Hybrid Async Decomposition Sampler)	2022-11-12 22:32:59 +07:00
dwave-inspector	academic/dwave-inspector: Added (visualize D-Wave structured solver)	2022-11-12 22:32:59 +07:00
dwave-neal	academic/dwave-neal: Update DEP.	2023-04-29 09:30:05 +07:00
dwave-networkx	academic/dwave-networkx: Added (D-Wave Systems network exploration)	2022-11-12 22:32:59 +07:00
dwave-ocean-sdk	academic/dwave-ocean-sdk: Fix deps.	2022-11-19 10:08:09 +07:00
dwave-preprocessing	academic/dwave-preprocessing: Added (binary quadratic models tools)	2022-11-12 22:32:59 +07:00
dwave-system	academic/dwave-system: Added (basic API for D-Wave system)	2022-11-12 22:32:59 +07:00
dwave-tabu	academic/dwave-tabu: Added (C/C++ implementation of MST2 for QUBO)	2022-11-12 22:32:59 +07:00
dwavebinarycsp	academic/dwavebinarycsp: Added (contruct binary quadratic models)	2022-11-12 22:32:58 +07:00
easy_spice
ed-v6	Daves unified names	2023-05-06 08:28:36 +07:00
edsim51di
elk	academic/elk: Fix SlackBuild permissions.	2022-11-12 22:33:05 +07:00
EMBASSY
EMBOSS
engauge
ent
eprover
equalx
ess
evopedia_qt
exonerate
extrema
fann
fastqc	academic/fastqc: Remove .svn folders that were causing java-errors.	2023-04-23 09:40:07 +07:00
FCSalyzer
fet	academic/fet: Updated for version 6.9.0.	2023-04-22 11:38:30 +07:00
fiji	academic/fiji: Fix ARCH section.	2023-05-20 11:17:56 +07:00
finchtv	academic/finchtv: Fix ARCH section.	2023-05-20 11:17:56 +07:00
fityk	academic/fityk: Updated for version 1.3.2.	2023-04-08 09:16:26 +07:00
flann
flexbar
free42
FreeFem	academic/FreeFem: Updated for version 4.12.	2023-01-07 08:03:29 +07:00
g3data
Gabedit
gaiasky	academic/gaiasky: Added (3D universe simulator for desktop and VR)	2023-04-08 09:16:28 +07:00
galculator
gaw3	academic/gaw3: Updated for version 20220315.	2023-04-01 09:14:08 +07:00
Gblocks	academic/Gblocks: Fix ARCH section.	2023-05-20 11:17:57 +07:00
gchemutils
gcompris-qt	academic/gcompris-qt: Updated for version 3.2.	2023-03-31 06:01:14 +07:00
geda-gaf
gelemental	academic/gelemental: Updated for version 2.0.2.	2023-04-22 11:38:28 +07:00
gem5	academic/gem5: Added (open-source system-level & CPU simulator)	2022-10-29 10:28:33 +07:00
geneconv
genius
genometools
genpak
GeoGebra
geomview	academic/geomview: Updated for version 1.9.5.	2023-02-04 07:19:52 +07:00
gerbv
getdp
getfem	academic/getfem: Fix deps.	2022-11-12 22:33:19 +07:00
ggobi
ghemical
glpk
glvis	academic/glvis: Added (finite element visualization tool).	2022-11-25 14:22:50 +07:00
gmsh	academic/gmsh: Updated for version 4.11.1.	2023-01-14 08:50:10 +07:00
gnucap
gp2fasta
gpredict
grace
gresistor	academic/gresistor: Align with template.	2023-05-20 11:17:29 +07:00
gretl
gri
Gridcoin-Research	academic/Gridcoin-Research: Updated for version 5.4.5.0	2023-04-29 18:11:56 +07:00
gromacs	academic/gromacs: Minor template nitpick.	2023-02-18 10:07:13 +07:00
grpn
gspiceui
gtkwave
gtypist	academic/gtypist: Updated maintainer info.	2022-11-18 22:02:50 +07:00
gwyddion	academic/gwyddion: Updated for version 2.62.	2022-11-12 22:32:56 +07:00
h5utils	academic/h5utils: Updated for version 1.13.2.	2023-02-18 10:06:44 +07:00
harminv	academic/harminv: Updated for version 1.4.2.	2023-02-18 10:06:44 +07:00
HMMER
hyphy	academic/hyphy: Updated for version 2.5.50.	2023-05-13 19:27:12 +07:00
IGV	academic/IGV: Updated for version 2.16.1.	2023-04-22 11:38:31 +07:00
io_lib	academic/io_lib: Updated for version 1.15.0.	2023-05-13 19:27:04 +07:00
iqtree	academic/iqtree: Updated for version 2.2.2.4.	2023-04-22 11:38:31 +07:00
irsim
isoelectric-point
iTest
itex2mml
ITK
jalview	academic/jalview: Updated for version 2.11.2.5.	2023-04-21 09:30:11 +07:00
jellyfish_k-mer
jpicedt
jugglinglab
karma
klavaro	academic/klavaro: Updated for version 3.14.	2022-12-31 09:14:42 +07:00
klu	academic/klu: Align with template.	2023-05-20 11:17:29 +07:00
knime
kraken
Kst	academic/Kst: Updated for version 20221025_5fdd819.	2023-02-22 12:09:51 +07:00
ktikz
kurso
labplot2	academic/labplot2: Updated for version 2.10.0.	2023-04-22 11:38:29 +07:00
ladr
laghos	academic/laghos: Added (LAGrangian High-Order Solver)	2022-12-17 09:13:53 +07:00
lalnview
lapack95
lapacke	academic/lapacke: Align with template.	2023-05-20 11:17:30 +07:00
latex2html
ldl	academic/ldl: Align with template.	2023-05-20 11:17:30 +07:00
libghemical
link-grammar
locarna
lpsolve
mafft	academic/mafft: Updated for version 7.520.	2023-05-13 19:27:12 +07:00
magic
mathics	academic/mathics: Fix deps.	2022-11-12 22:33:12 +07:00
mathjax2
mathomatic
matio	academic/matio: Updated for version 1.5.23.	2023-02-11 09:30:46 +07:00
maxima	academic/maxima: Updated for version 5.46.0.	2022-10-08 09:12:41 +07:00
meep	academic/meep: Updated for version 1.25.0.	2023-02-25 09:18:06 +07:00
megax	academic/megax: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
meme-db-gomo
meme-db-motif
meme-db-tgene
meme-suite	academic/meme-suite: Updated for version 5.5.2.	2023-05-13 19:27:11 +07:00
mendeleydesktop
metalwalls	academic/metalwalls: Added (Molecular modelling systems).	2022-10-19 01:02:36 +07:00
MetaPhlAn2	academic/MetaPhlAn2: Fix ARCH and deps.	2022-11-12 22:33:20 +07:00
metis	academic/metis: Align with template.	2023-05-20 11:17:30 +07:00
mfem	academic/mfem: Added (library for finite element methods).	2022-11-20 09:37:41 +07:00
minorminer	academic/minorminer: Added (heuristic tool for minor embedding).	2022-11-12 10:48:01 +07:00
mkDSSP
molequeue
mpb
mrbayes
mumsa
muscle
muscle5	academic/muscle5: Added (MUSCLE 5: Next-generation MUSCLE)	2022-10-15 10:47:28 +07:00
ncbi-blast	academic/ncbi-blast: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
ncbi-blast+
ncbi-rmblastn
nco	academic/nco: Updated for version 5.1.5.	2023-04-22 11:38:23 +07:00
ncview
ngspice	academic/ngspice: Remove openmpi from REQUIRES.	2023-05-06 08:28:22 +07:00
novocraft
NWChem	academic/NWChem: Added (High-Performance Computational Chemistry)	2022-12-10 07:43:12 +07:00
octave	academic/octave: Align with template.	2023-05-20 11:17:30 +07:00
openboard	academic/openboard: Fix build with newer ffmpeg.	2022-10-13 10:19:15 +07:00
OpenFOAM
OpenMM	academic/OpenMM: Fix github tarball handling.	2022-11-05 21:15:16 +07:00
OpenVSP	academic/OpenVSP: Moved from graphics. Updated for version 3.31.1.	2023-01-21 10:22:03 +07:00
pal2nal
paml	academic/paml: Updated for version 4.10.6.	2023-04-22 11:38:27 +07:00
pamlX	academic/pamlX: Fix paml docs dir.	2023-04-22 11:38:28 +07:00
papi
pari
parmetis
patsy	academic/patsy: Fix deps.	2022-11-12 22:33:12 +07:00
pcalc
pcb
penaltymodel	academic/penaltymodel: Added (penalty model solver).	2022-11-12 10:49:57 +07:00
perlprimer
petsc	academic/petsc: Fix deps.	2022-11-12 22:33:16 +07:00
PhyML
pianobooster
plasmidomics
plus42	academic/plus42: Updated for version 1.0.19.	2023-05-20 11:17:08 +07:00
pomoxis	academic/pomoxis: Added (bioinformatics tools for nanopore research)	2023-03-18 09:50:22 +07:00
prank-msa
primer3
pspp	academic/pspp: Updated for version 1.6.2.	2023-03-04 07:16:37 +07:00
pulseview
PyAMG	academic/PyAMG: Fix deps.	2022-11-12 22:33:11 +07:00
pyCRAC	academic/pyCRAC: Updated to version 1.5.2; crac_pipeline no longer included (see README)	2023-04-15 06:41:28 +07:00
pyfits	academic/pyfits: Align with template.	2023-05-20 11:17:27 +07:00
pysam	academic/pysam: Updated for version 0.21.0.	2023-04-15 07:15:38 +07:00
python2-kiwisolver	academic/python2-kiwisolver: Align with template.	2023-05-20 11:17:41 +07:00
python2-scipy	academic/python2-scipy: Align with template.	2023-05-20 11:17:41 +07:00
python3-ase	academic/python3-ase: Added (Atomic Simulation Environment (ASE))	2022-12-10 07:43:12 +07:00
python3-scipy	academic/python3-scipy: Align with template.	2023-05-20 11:17:41 +07:00
qalculate-gtk
qcl
qhull
qrupdate	academic/qrupdate: Align with template.	2023-05-20 11:17:30 +07:00
qucs
qucs-s	academic/qucs-s: Updated for version 1.0.2.	2023-04-29 18:11:45 +07:00
R	academic/R: update 4.3.0	2023-04-22 10:01:16 +07:00
ramulator	academic/ramulator: Fix github tarball handling.	2022-11-26 09:11:46 +07:00
RAxML
rbio	academic/rbio: Align with template.	2023-05-20 11:17:27 +07:00
reduce-algebra
RepeatMasker
root	academic/root: do not download and use gtest	2023-04-05 14:52:11 +07:00
rpy2	academic/rpy2: Updated for version 3.5.10.	2023-04-15 07:15:38 +07:00
sage
sage-bin
samtools	academic/samtools: Updated for version 1.17.	2023-04-15 07:15:39 +07:00
samtools-legacy
scidavis
scilab
seaview	academic/seaview: treerecs added to REQUIRES.	2023-04-22 11:38:31 +07:00
seqkit	academic/seqkit: Fix ARCH sect.	2023-05-20 11:17:56 +07:00
SeqMonk
sequence-analysis
Shark
sigrok-cli
SimEng	academic/SimEng: Fix github tarball handling.	2022-11-26 09:11:46 +07:00
siril
smath-studio	academic/smath-studio: Updated for version 1.0.8348	2022-12-03 11:46:53 +07:00
snpEff
solfege
spades	academic/spades: Updated for version 3.15.5.	2023-04-21 09:30:46 +07:00
speedcrunch
spiceopus
spidey	academic/spidey: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
spqr	academic/spqr: Align with template.	2023-05-20 11:17:30 +07:00
squizz
staden	academic/staden: A few enhancements.	2023-05-13 19:27:12 +07:00
STAR	academic/STAR: ugraded to version 2.7.10b	2022-11-24 22:14:26 +07:00
stellarium	academic/stellarium: Updated for version 23.1.	2023-05-06 08:28:22 +07:00
stellarsolver
stringtie
SU2
suitesparse
suitesparseconfig	academic/suitesparseconfig: Align with template.	2023-05-20 11:17:30 +07:00
sundials
sword
sword-data-kjv
t_coffee
tabix-legacy
tiemu	academic/tiemu: New maintainer.	2023-02-25 09:18:10 +07:00
tilem
tilem2
tkgate
topdraw
tophat
treebest-ensembl
TreeGraph
treerecs	academic/treerecs: Added (Treerecs: a tree reconciliation tool)	2023-04-22 11:38:30 +07:00
treeviewx
trfind
trimmomatic
tuxmath
tuxtype2
ucsc-blat	academic/ucsc-blat: Fix and mv ARCH sect, http->https.	2023-05-20 11:17:56 +07:00
ugene	academic/ugene: Updated for version 46.0.	2023-04-21 09:31:29 +07:00
umfpack	academic/umfpack: Align with template.	2023-05-20 11:17:31 +07:00
units
vCAPS_coevolution
vcftools
velocyto	academic/velocyto: Use correct github URL.	2023-03-25 10:02:01 +07:00
verilator
verilog	academic/verilog: Fix download url.	2022-11-05 12:56:05 +07:00
veusz	academic/veusz: Fix deps.	2022-11-12 22:33:18 +07:00
ViennaRNA	academic/ViennaRNA: Fix build.	2023-03-11 21:19:45 +07:00
voro++	academic/voro++: Added (A 3D Voronoi cell software library)	2022-10-15 10:47:38 +07:00
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel
WEVOTE
wmcalc	academic/wmcalc: Fix doinst.sh.	2022-12-31 09:14:48 +07:00
WolframEngine	academic/WolframEngine: Updated for version 13.2.0.	2023-03-11 21:15:48 +07:00
WordNet
wxMaxima
x48
xcircuit	academic/xcircuit: Updated for version 3.10.30. New maintainer.	2023-03-25 10:01:45 +07:00
xephem
xflr5
xfoil
xiphos	academic/xiphos: Update DEP.	2023-02-25 08:54:00 +07:00
xoscope	academic/xoscope: Align with template.	2023-05-20 11:17:31 +07:00
xsimd	academic/xsimd: Updated for version 11.1.0.	2023-05-20 11:17:22 +07:00
yices2	academic/yices2: Added (Satisfiability modulo theories solver).	2022-11-05 12:46:15 +07:00
z3	academic/z3: Updated for version 4.11.2.	2022-10-08 09:12:54 +07:00
ZeGrapher
zotero	academic/zotero: Updated for version 6.0.26.	2023-05-06 08:28:18 +07:00
zotero-gtk2	academic/zotero-gtk2: Added (Collect and share research sources)	2023-05-06 08:28:23 +07:00