Christoph Willing 2cffe54350 academic/suitesparse: Updated for version 5.1.0 ... Signed-off-by: Christoph Willing <chris.willing@linux.com>		2017-12-09 08:27:46 +07:00
..
abntex	academic/abntex: New homepage.	2017-04-13 07:27:50 +07:00
aenig4	academic/aenig4: Added (Enigma M4 Cipher Machine Emulator).	2017-04-08 06:57:49 +07:00
aline
amd	academic/amd: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:34 +07:00
amplicon	academic/amplicon: Make .desktop validate.	2017-03-25 13:26:53 +00:00
amplifx
antiprism
archaeopteryx	academic/archaeopteryx: Updated for version 0.9920b.	2017-10-11 06:19:45 +07:00
aris
arka	academic/arka: Make .desktop validate.	2017-03-25 13:26:55 +00:00
armadillo	academic/armadillo: Updated for version 8.100.0.	2017-10-07 00:34:52 +01:00
arpack	academic/arpack: new maintainer.	2017-03-04 07:01:42 +07:00
arpack-ng	academic/arpack-ng: Updated for version 3.5.0.	2017-05-27 07:29:10 +07:00
artha
avl	academic/avl: Updated for version 3.36.	2017-04-13 13:48:44 +07:00
avogadro	academic/avogadro: Update HOMEPAGE url.	2017-04-13 07:23:17 +07:00
bedGraphToBigWig
bedtools
biblesync
bibletime	academic/bibletime: Updated for version 2.11.1.	2017-10-04 10:57:52 +01:00
bibus	academic/bibus: New maintainer.	2017-03-18 06:58:27 +07:00
bowtie
bowtie2
bpp-core	academic/bpp-core: Updated for version 2.3.1.	2017-10-11 06:19:46 +07:00
bpp-phyl	academic/bpp-phyl: Updated for version 2.3.1.	2017-10-11 06:19:46 +07:00
bpp-phyl-omics	academic/bpp-phyl-omics: Updated for version 2.3.1.	2017-10-11 06:19:47 +07:00
bpp-popgen	academic/bpp-popgen: Updated for version 2.3.1.	2017-10-11 06:19:47 +07:00
bpp-seq	academic/bpp-seq: Updated for version 2.3.1.	2017-10-11 06:19:46 +07:00
bpp-seq-omics	academic/bpp-seq-omics: Updated for version 2.3.1.	2017-10-11 06:19:46 +07:00
bppsuite	academic/bppsuite: Updated for version 2.3.1.	2017-10-11 06:19:47 +07:00
btf	academic/btf: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:36 +07:00
bwa	academic/bwa: Updated for version 0.7.16a.	2017-10-11 06:19:47 +07:00
cadabra2	academic/cadabra2: Updated for version 2.1.7.	2017-12-02 06:31:04 +07:00
CAFS_divergence
calc
calcoo	academic/calcoo: Fix ownership.	2017-07-15 07:27:22 +07:00
camd	academic/camd: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:34 +07:00
cap3
CAPS_coevolution
cblas	academic/cblas: Updated for version 3.7.1.	2017-07-01 07:42:13 +07:00
ccolamd	academic/ccolamd: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:35 +07:00
celestia	academic/celestia: Allow VERSION override, i486=>i586.	2017-03-25 13:26:49 +00:00
chemtool
cholmod	academic/cholmod: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:37 +07:00
cistrome-CEAS
cistrome-conductGO	academic/cistrome-conductGO: Fix ownership.	2017-07-15 07:28:59 +07:00
cistrome-extra	academic/cistrome-extra: Updated for version git_20170829_6334683.	2017-10-11 06:19:48 +07:00
cistrome-MACS
cistrome-mdseqpos	academic/cistrome-mdseqpos: Updated for v. git_20170829_6334683.	2017-10-11 06:19:48 +07:00
cld2
clustalo	academic/clustalo: Updated for version 1.2.4.	2017-04-22 08:10:39 +07:00
clustalw
clustalx	academic/clustalx: Make .desktop validate.	2017-03-25 13:26:51 +00:00
colamd	academic/colamd: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:35 +07:00
convertall
copasi	academic/copasi: Updated for version 4.22.170.	2017-11-17 01:25:54 +07:00
coq
csparse	academic/csparse: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:35 +07:00
cufflinks
cutadapt	academic/cutadapt: Updated for version 1.14.	2017-10-11 06:19:48 +07:00
cxsparse	academic/cxsparse: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:36 +07:00
dakota	academic/dakota: Install the doinst.sh file.	2017-10-11 06:19:42 +07:00
Data2FCS	academic/Data2FCS: Added (Data2FCS and FCS2Data).	2017-04-29 12:51:27 +07:00
drawtiming
ds9	academic/ds9: Added (Astronomical tool).	2017-06-30 13:58:28 +07:00
easy_spice	academic/easy_spice: Use tgz.	2017-08-26 07:20:03 +07:00
edsim51di	academic/edsim51di: Updated for version 2.1.20.	2017-06-28 11:35:31 +07:00
EMBASSY
EMBOSS	academic/EMBOSS: Make .desktop validate.	2017-03-25 13:26:54 +00:00
engauge	academic/engauge: Fix ownership.	2017-07-15 07:27:02 +07:00
ent	academic/ent: Fix license URL.	2017-03-04 07:26:38 +07:00
equalx
ess	academic/ess: Fix DOWNLOAD.	2017-06-25 07:32:20 +07:00
evopedia_qt
exonerate	academic/exonerate: Switch to https.	2017-10-26 09:25:14 +07:00
extrema	academic/extrema: New maintainer.	2017-03-18 06:58:28 +07:00
fann
fastqc
FCSalyzer	academic/FCSalyzer: Updated for version 0.9.14_alpha.	2017-10-11 06:19:32 +07:00
fet	academic/fet: Updated for version 5.34.0.	2017-11-20 17:59:05 +07:00
finchtv	academic/finchtv: Updated for version 1.3.1.	2017-10-11 06:19:49 +07:00
fityk
flann
flashqard
flexbar	academic/flexbar: Added (barcode and adapter removal).	2017-09-16 07:15:01 +07:00
free42	academic/free42: Updated for version 2.0.4.	2017-07-29 17:50:21 +07:00
freechartgeany
g3data	academic/g3data: new maintainer.	2017-03-04 01:45:10 +07:00
galculator
gaw3	academic/gaw3: Updated for version 20170716.	2017-12-02 06:30:53 +07:00
Gblocks
gcalctool	academic/gcalctool: Update HOMEPAGE url.	2017-04-12 16:01:57 +07:00
gchemutils
gcompris
geda-gaf
gelemental
geneconv
genius
genometools
genpak
GeoGebra	academic/GeoGebra: Updated for version 5.0.361.0.	2017-05-28 20:59:44 +01:00
geomview
gerbv
ggobi	academic/ggobi: Allow VERSION override, i486=>i586.	2017-03-25 13:26:49 +00:00
ghemical
glpk	academic/glpk: Updated for version 4.61 + new maintainer.	2017-03-18 06:58:29 +07:00
gnucap
gp2fasta	academic/gp2fasta: Update HOMEPAGE and DOWNLOAD urls.	2017-08-12 06:58:19 +07:00
gpredict
grace	academic/grace: i486=>i586.	2017-03-25 13:26:49 +00:00
gresistor	academic/gresistor: Updated homepage	2017-05-20 06:53:21 +07:00
gretl	academic/gretl: Updated for version 2017c.	2017-07-29 17:50:22 +07:00
grpn
gspiceui	academic/gspiceui: Updated for version 1.1.00.	2017-09-02 10:19:45 +01:00
gtkwave
gtypist	academic/gtypist: Make .desktop validate.	2017-03-25 13:26:56 +00:00
gwyddion	academic/gwyddion: Updated for version 2.49.	2017-08-19 07:10:31 +07:00
HMMER
hyphy	academic/hyphy: Added (Hypothesis Testing using Phylogenies).	2017-10-11 06:19:52 +07:00
ij-plugins-LOCI
ij-plugins-UCSD
ImageJ
io_lib	academic/io_lib: Updated for version 1.14.9.	2017-04-22 08:10:39 +07:00
irsim
isoelectric-point	academic/isoelectric-point: Make .desktop validate.	2017-03-25 13:26:53 +00:00
iTest
itex2mml	academic/itex2mml: Remove obsolete patch.	2017-11-04 07:17:46 +07:00
jalview
jpicedt
jugglinglab	academic/jugglinglab: Make .desktop validate.	2017-03-25 13:26:56 +00:00
karma	academic/karma: Fix library issue.	2017-06-24 08:32:16 +07:00
kile
klavaro
klu	academic/klu: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:37 +07:00
knime	academic/knime: Fix ownership.	2017-07-15 07:27:43 +07:00
Kst
ktikz
kurso
labplot2	academic/labplot2: Updated for version 2.4.0.	2017-04-20 23:41:56 +07:00
ladr	academic/ladr: Allow VERSION override, i486=>i586.	2017-03-25 13:26:50 +00:00
lalnview
lapack95	academic/lapack95: New maintainer.	2017-03-05 08:36:05 +07:00
lapacke	academic/lapacke: Updated for version 3.7.1.	2017-07-01 07:42:13 +07:00
ldl	academic/ldl: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:36 +07:00
libghemical
libqalculate	academic/libqalculate: Updated for version 2.1.0	2017-10-14 14:48:50 +01:00
link-grammar
loggerpro	academic/loggerpro: Remove template comments, i486=>i586.	2017-03-25 13:26:50 +00:00
lpsolve
mafft	academic/mafft: Switch to https.	2017-10-07 07:01:54 +07:00
magic
mathics	academic/mathics: Updated for version 1.0.	2017-04-08 06:57:44 +07:00
mathomatic
matio
maxima
megacc	academic/megacc: Updated for version 7.0.26_1.	2017-10-11 06:19:49 +07:00
meme-suite	academic/meme-suite: Added (Motif based sequence analysis tools).	2017-10-11 06:19:52 +07:00
mendeleydesktop	academic/mendeleydesktop: Updated homepage link.	2017-05-20 06:55:02 +07:00
metis
mkDSSP
Mnemosyne	academic/Mnemosyne: Fix whitespaces.	2017-10-07 07:01:53 +07:00
mpmath	academic/mpmath: Switch to i586.	2017-06-21 08:51:22 +01:00
mrbayes
muscle
ncbi-blast	academic/ncbi-blast: Updated homepage link.	2017-05-20 06:54:53 +07:00
ncbi-blast-plus	academic/ncbi-blast-plus: Updated homepage link.	2017-05-20 06:54:53 +07:00
ngspice	academic/ngspice: Updated for version 27.	2017-11-23 17:27:05 +00:00
novocraft	academic/novocraft: Added (map short reads onto reference genome).	2017-09-16 07:15:01 +07:00
octave	academic/octave: Updated for version 4.2.1.	2017-03-18 06:59:49 +07:00
OpenFOAM	academic/OpenFOAM: Fix build.	2017-09-30 00:42:08 +01:00
pal2nal	academic/pal2nal: Added (Create a codon-based DNA alignment).	2017-10-11 06:19:51 +07:00
paml	academic/paml: Update DOWNLOAD url.	2017-11-04 07:17:46 +07:00
pamlX	academic/pamlX: Amended to build with paml 4.9e.	2017-04-22 08:10:39 +07:00
papi
parmetis
patsy
pcb
perlprimer	academic/perlprimer: Make .desktop validate.	2017-03-25 13:26:54 +00:00
PhyML	academic/PhyML: Updated for version 3.3.20170530.	2017-10-11 06:19:45 +07:00
pianobooster
plasmidomics
prank-msa	academic/prank-msa: Updated for version 170427.	2017-10-11 06:19:49 +07:00
primer3
pspp	academic/pspp: Remove trailing whitespace in .info.	2017-03-25 13:26:50 +00:00
pulseview	academic/pulseview: Switch to https.	2017-08-26 09:29:14 +07:00
PyAMG	academic/PyAMG: Update HOMEPAGE.	2017-06-06 07:56:33 +07:00
pyCRAC	academic/pyCRAC: Updated for version 1.2.4.0.	2017-11-20 17:59:07 +07:00
pyfits	academic/pyfits: Update deps.	2017-06-06 07:56:16 +07:00
pysam	academic/pysam: Added (read/write genomic data sets).	2017-09-16 07:15:00 +07:00
qalculate-gtk	academic/qalculate-gtk: Updated for version 2.1.0	2017-10-14 14:48:50 +01:00
qhull	academic/qhull: Updated for version 2015.2.	2017-06-30 13:05:01 +07:00
qrupdate	academic/qrupdate: Improve BLAS/LAPACK support + New maintainer.	2017-03-18 06:59:49 +07:00
QtiPlot	academic/QtiPlot: Make .desktop validate.	2017-03-25 13:43:31 +00:00
qtoctave	academic/qtoctave: Updated homepage link.	2017-05-20 06:54:18 +07:00
qucs
R	academic/R: Updated for version 3.3.3.	2017-03-09 12:20:16 +00:00
rbio	academic/rbio: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:36 +07:00
reduce-algebra	academic/reduce-algebra: Updated for version 20171112svn4264.	2017-11-18 12:40:26 +07:00
root
sage	academic/sage: New maintainer.	2017-08-12 06:57:31 +07:00
samtools
scidavis	academic/scidavis: Patched to fix crashes.	2017-12-02 06:31:04 +07:00
scilab	academic/scilab: Updated for version 6.0.0 + new maintainer.	2017-08-12 06:57:30 +07:00
scipy	academic/scipy: Update HOMEPAGE.	2017-05-27 07:29:45 +07:00
scipy3	academic/scipy3: Update HOMEPAGE.	2017-05-27 07:29:46 +07:00
seaview
sequence-analysis	academic/sequence-analysis: Make .desktop validate.	2017-03-25 13:26:54 +00:00
sigrok-cli	academic/sigrok-cli: Switch to https.	2017-08-26 09:30:34 +07:00
siril	academic/siril: Fix doc ownership, use our cflags.	2017-07-12 16:39:17 +01:00
slatec
smath-studio
snpEff	academic/snpEff: Updated for version 4.3r.	2017-10-11 06:19:50 +07:00
solfege	academic/solfege: Update HOMEPAGE and DOWNLOAD urls.	2017-06-03 07:59:40 +07:00
spades	academic/spades: Updated for version 3.11.1.	2017-10-11 06:19:50 +07:00
speedcrunch
spiceopus
spidey	academic/spidey: Update HOMEPAGE.	2017-05-27 07:29:56 +07:00
spqr	academic/spqr: Updated for version 2.0.8.	2017-07-08 07:11:37 +07:00
squizz	academic/squizz: Updated for version 0.99d.	2017-04-22 08:10:40 +07:00
staden
stellarium	academic/stellarium: Updated for version 0.16.0.	2017-08-26 07:19:30 +07:00
suitesparse	academic/suitesparse: Updated for version 5.1.0	2017-12-09 08:27:46 +07:00
suitesparseconfig	academic/suitesparseconfig: Updated for version 4.5.5.	2017-07-08 07:11:34 +07:00
sundials	academic/sundials: Update HOMEPAGE and DOWNLOAD urls.	2017-05-27 07:29:59 +07:00
sword
sword-data-kjv
sympy
t_coffee
tabix
tilem	academic/tilem: Allow VERSION override, i486=>i586.	2017-03-25 13:26:51 +00:00
tilem2	academic/tilem2: Fix ownership.	2017-07-15 07:28:25 +07:00
tkgate
topdraw
tophat	academic/tophat: Force a single make job.	2017-07-29 17:50:23 +07:00
treeview	academic/treeview: Updated for version 0.5.1.	2017-08-13 09:00:13 +07:00
tuxmath
tuxtype2	academic/tuxtype2: Make .desktop validate.	2017-03-25 13:42:52 +00:00
ucsc-blat	academic/ucsc-blat: Update HOMEPAGE.	2017-05-27 07:30:10 +07:00
ugene	academic/ugene: Updated for version 1.27.0.	2017-10-11 06:19:50 +07:00
umfpack	academic/umfpack: BUILD bump for SuiteSparse 4.5.5.	2017-07-08 07:11:37 +07:00
units	academic/units: Updated for version 2.14.	2017-04-01 06:56:59 +07:00
vcftools	academic/vcftools: Updated for version 0.1.15.	2017-10-11 06:19:50 +07:00
verilog
veusz	academic/veusz: Updated for version 2.1.1.	2017-11-18 12:40:26 +07:00
wehi-cellsymphony	academic/wehi-cellsymphony: Make .desktop validate.	2017-03-25 13:26:54 +00:00
wehi-deid	academic/wehi-deid: Make .desktop validate.	2017-03-25 13:26:53 +00:00
wehi-hackit	academic/wehi-hackit: Make .desktop validate.	2017-03-25 13:26:55 +00:00
wehi-weasel	academic/wehi-weasel: Updated for version 3.4.2.17.	2017-10-11 06:19:51 +07:00
wmcalc
WordNet
wxmacmolplt
wxMaxima
xcircuit
xephem	academic/xephem: Make .desktop validate.	2017-03-25 13:26:56 +00:00
xfoil
xiphos	academic/xiphos: Updated for version 4.0.7.	2017-10-21 06:58:09 +07:00
xoscope
Xyce
zotero	academic/zotero: Updated for version 5.0.21.	2017-10-11 06:19:51 +07:00