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64 lines
2.6 KiB
Text
64 lines
2.6 KiB
Text
CBSTOOLS: The CBSTOOLS package is a set of wrappers to selected
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applications from the CBS group in Denmark.
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CLUSTALOMEGA: A wrapper for the clustal omega application.
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DOMAINATRIX: The DOMAINATRIX programs were developed by Jon Ison and
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colleagues at MRC HGMP for their protein domain research. They are
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included as an EMBASSY package as a work in progress.
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DOMALIGN: The DOMALIGN programs were developed by Jon Ison and
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colleagues at MRC HGMP for their protein domain research. They are
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included as an EMBASSY package as a work in progress.
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DOMSEARCH: The DOMSEARCH programs were developed by Jon Ison and
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colleagues at MRC HGMP for their protein domain research. They are
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included as an EMBASSY package as a work in progress.
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EMNU: The EMNU package is a simple EMBOSS menu system written by Gary
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Williams at HGMP.
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ESIM4: The ESIM4 package is an EMBOSS conversion of the SIM4 package
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from Liliana Florea.
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HMMER: A suite of application wrappers to the original hmmer v2.3.2
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applications written by Sean Eddy. hmmer v2.3.2 must be installed on
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the same system as EMBOSS and the location of the hmmer executables
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must be defined in your path for EMBASSY HMMER to work.
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IPRSCAN: The IPRSCAN package is a wrapper for the interproscan
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program.
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MEME: The EMBASSY MEME package contains 'wrapper' applications
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providing an EMBOSS-style interface to the applications in the
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original MEME package version 4.0.0 developed by Timothy L. Bailey.
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MIRA: The MIRA package is a fragment assembly program from Bastien
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Chevreux. The program was converted to EMBOSS by Alan Bleasby as two
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applications, one for EST assembly and one for shotgun fragment
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assembly
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MSE: The MSE package is a multiple sequence editor. The program was
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contributed to the EMBOSS package by the author, Will Gilbert, as one
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of the first EMBASSY programs.
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MYEMBOSS: A package for your own software developments.
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MYEMBOSSDEMO: The MYEMBOSSDEMO package contains example applications
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using EMBOSS data types
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PHYLIPNEW: The PHYLIPNEW programs are EMBOSS conversions of the
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programs in Joe Felsenstein's PHYLIP package, version 3.69.
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SIGNATURE: The SIGNATURE programs were developed by Jon Ison and
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colleagues at MRC HGMP for their protein domain research. They are
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included as an EMBASSY package as a work in progress.
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STRUCTURE: The STRUCTURE programs were developed by Jon Ison and
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colleagues at MRC HGMP for their protein domain research. They are
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included as an EMBASSY package as a work in progress.
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TOPO: The TOPO package is a graphics program to display membrane
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protein topology by Susan Jean Johns.
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VIENNA: These programs are adapted from the VIENNA RNA package.
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