slackbuilds_ponce/academic/ncbi-rmblastn
Heinz Wiesinger 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var
Signed-off-by: Heinz Wiesinger <pprkut@slackbuilds.org>
2021-07-17 21:55:09 +02:00
..
ncbi-rmblastn.info
ncbi-rmblastn.SlackBuild
README
slack-desc

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST
suite. The primary difference between this distribution and the NCBI
distribution is the addition of a new program "rmblastn" for use with
RepeatMasker and RepeatModeler.

RMBlast supports RepeatMasker searches by adding a few necessary
features to the stock NCBI blastn program. These include:

- Support for custom matrices ( without KA-Statistics )
- Support for cross_match-like complexity adjusted scoring
  (Cross_match is Phil Green's seeded smith-waterman search algorithm:
   www.phrap.org )
- Support for cross_match-like masklevel filtering.