mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-22 19:44:21 +01:00
18 lines
790 B
Text
18 lines
790 B
Text
The program Flexbar preprocesses high-throughput sequencing data
|
|
efficiently. It demultiplexes barcoded runs and removes adapter
|
|
sequences. Moreover, trimming and filtering features are provided.
|
|
Flexbar increases read mapping rates and improves genome as well as
|
|
transcriptome assemblies. It supports next-generation sequencing data
|
|
in fasta and fastq format, e.g. from Roche 454 and the Illumina
|
|
platform.
|
|
|
|
The script downloads the segan-library needed for compilation.
|
|
|
|
References
|
|
|
|
Johannes T. Roehr, Christoph Dieterich, Knut Reinert:
|
|
Flexbar 3.0 - SIMD and multicore parallelization. Bioinformatics 2017.
|
|
|
|
Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich:
|
|
Flexbar - flexible barcode and adapter processing for next-generation
|
|
sequencing platforms. Biology 2012.
|