Kyle Guinn cd8a3a547c academic/octave: Updated for version 4.4.1. ... Signed-off-by: Kyle Guinn <elyk03@gmail.com>		2019-01-05 07:49:30 +07:00
..
abntex
aenig4	academic/aenig4: Updated for version 1.04.	2018-11-03 07:46:38 +07:00
aline
aliview	academic/aliview: Updated for version 1.25.	2018-12-24 08:56:07 +07:00
amd	academic/amd: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:27 +07:00
amplicon
amplifx
antiprism
archaeopteryx	academic/archaeopteryx: Updated for version 0.9928b.	2018-12-24 08:56:55 +07:00
aris
arka
armadillo
arpack
arpack-ng	academic/arpack-ng: Updated for version 3.6.3.	2019-01-05 07:49:30 +07:00
artha
avl
avogadro
bcftools	academic/bcftools: Added (BCF calling tools).	2019-01-05 07:49:16 +07:00
bedGraphToBigWig
bedtools
biblesync	academic/biblesync: Updated for version 2.0.1.	2018-05-01 22:01:17 +01:00
bibletime	academic/bibletime: Updated for version 2.11.2.	2018-06-28 22:22:10 +01:00
bibus
boinc	academic/boinc: Updated for version 7.14.2.	2018-12-22 08:44:24 +07:00
bowtie
bowtie2	academic/bowtie2: Updated for version 2.3.4.3 + new maintainer.	2019-01-05 07:49:15 +07:00
bowtie2-legacy	academic/bowtie2-legacy: Added (aligning sequencing reads).	2018-12-24 08:59:33 +07:00
bpp-core	academic/bpp-core: Updated for version 2.4.1.	2018-12-24 09:00:24 +07:00
bpp-phyl	academic/bpp-phyl: Updated for version 2.4.1.	2018-12-24 09:01:05 +07:00
bpp-phyl-omics	academic/bpp-phyl-omics: Updated for version 2.4.1.	2018-12-24 09:01:40 +07:00
bpp-popgen	academic/bpp-popgen: Updated for version 2.4.1.	2018-12-24 09:02:22 +07:00
bpp-seq	academic/bpp-seq: Updated for version 2.4.1.	2018-12-24 09:02:59 +07:00
bpp-seq-omics	academic/bpp-seq-omics: Updated for version 2.4.1.	2018-12-24 09:03:37 +07:00
bppsuite	academic/bppsuite: Updated for version 2.4.1.	2018-12-24 09:04:15 +07:00
btf	academic/btf: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:29 +07:00
bwa
cadabra2	academic/cadabra2: Fix DOWNLOAD url.	2018-04-27 00:41:02 +07:00
CAFS_divergence
calc	academic/calc: Update to 2.12.7.2	2018-12-01 07:27:58 +07:00
calcoo
camd	academic/camd: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:27 +07:00
cap3
CAPS_coevolution
cblas
ccolamd	academic/ccolamd: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
celestia
chemtool
cholmod	academic/cholmod: Updated for version 3.0.13.	2019-01-05 07:49:29 +07:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS
cistrome-mdseqpos
clark-ugene	academic/clark-ugene: Added (supervised sequence classification).	2018-12-24 09:09:59 +07:00
cld2
clustalo
clustalw
clustalx
colamd	academic/colamd: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
convertall
copasi	academic/copasi: Fix DOWNLOAD_x86_64.	2018-08-05 02:04:56 +07:00
coq
cryptominisat	academic/cryptominisat: Fix MD5SUM.	2018-12-26 02:35:20 +07:00
csparse	academic/csparse: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
cufflinks
cutadapt
cxsparse	academic/cxsparse: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
dakota	academic/dakota: Updated for version 6.8.	2018-06-07 14:33:56 +01:00
Data2FCS
diamond	academic/diamond: Added (A sequence aligner).	2018-12-24 09:11:11 +07:00
drawtiming
ds9	academic/ds9: Updated for version 7.6.	2018-05-12 06:58:27 +07:00
easy_spice
edsim51di
EMBASSY
EMBOSS
engauge	academic/engauge: Updated for version 10.10.	2018-10-21 06:45:27 +07:00
ent
equalx
ess	academic/ess: Updated for version 17.11.	2018-07-27 21:33:34 +07:00
evopedia_qt
exonerate
extrema
fann
fastqc	academic/fastqc: Updated for version 0.11.8 + new maintainer.	2018-12-22 00:03:06 -09:00
FCSalyzer	academic/FCSalyzer: Updated for version 0.9.16_alpha.	2018-12-24 08:54:20 +07:00
fet	academic/fet: Updated for version 5.36.1.	2018-06-28 20:39:23 +01:00
fiji	academic/fiji: Added (ImageJ Distribution).	2018-12-24 22:16:55 +07:00
finchtv
fityk
flann
flashqard
flexbar	academic/flexbar: Updated for version 3.4.0.	2018-07-07 06:54:16 +07:00
free42
freechartgeany
g3data
galculator
gaw3
Gblocks
gcalctool
gchemutils	academic/gchemutils: Updated for version 0.14.17.	2018-07-08 19:28:35 +01:00
gcompris
geda-gaf
gelemental
geneconv
genius
genometools	academic/genometools: Updated for version 1.5.10.	2018-07-08 19:32:20 +01:00
genpak
GeoGebra	academic/GeoGebra: Update homepage.	2018-06-02 07:32:36 +07:00
geomview
gerbv
ggobi
ghemical
glpk
gnucap
gp2fasta
gpredict	academic/gpredict: Updated for version 2.2.1 + new maintainer.	2018-09-29 07:47:37 +07:00
grace
gresistor
gretl
Gridcoin-Research	academic/Gridcoin-Research: Updated for version 4.0.1.0.	2018-12-15 09:17:10 +07:00
grpn
gspiceui
gtkwave
gtypist
gwyddion	academic/gwyddion: Updated for version 2.52.	2018-11-24 12:35:13 +07:00
HMMER	academic/HMMER: Updated for version 3.2.1.	2018-06-17 22:34:10 +01:00
hyphy	academic/hyphy: Updated for version 2.3.14.	2018-12-24 22:16:52 +07:00
io_lib
irsim
isoelectric-point	academic/isoelectric-point: Update homepage and download.	2018-12-01 07:27:43 +07:00
iTest
itex2mml
ITK	academic/ITK: Updated for version 4.13.1.	2018-09-08 08:37:51 +07:00
jalview
jellyfish_k-mer	academic/jellyfish_k-mer: Added (k-mers counting tools).	2018-12-25 05:33:47 +07:00
jpicedt
jugglinglab
karma
kile
kiwisolver	academic/kiwisolver: Added (Cassowary algorithm).	2018-11-03 07:45:00 +07:00
klavaro
klu	academic/klu: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:29 +07:00
knime
kraken	academic/kraken: Added (Assigning Taxonomic Labels).	2018-12-25 05:38:56 +07:00
Kst
ktikz
kurso
labplot2
ladr	academic/ladr: Switch homepage and download to https.	2018-10-06 07:25:21 +07:00
lalnview
lapack95
lapacke
ldl	academic/ldl: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
libghemical
libqalculate	academic/libqalculate: Updated for version 2.8.2	2018-12-09 13:17:30 +07:00
link-grammar
loggerpro	academic/loggerpro: Update homepage.	2018-07-17 07:15:39 +07:00
lpsolve
mafft	academic/mafft: Updated for version 7.407.	2018-12-24 09:15:34 +07:00
magic
mathics
mathomatic
matio
maxima
megax	academic/megax: Updated for version 10.0.5_1.	2018-12-24 09:21:25 +07:00
meme-suite
mendeleydesktop
metis
mkDSSP
Mnemosyne
mpmath
mrbayes	academic/mrbayes: Fixed download url.	2018-06-23 08:44:06 +07:00
muscle
ncbi-blast	academic/ncbi-blast: Update script.	2018-12-24 09:24:23 +07:00
ncbi-blast+	academic/ncbi-blast+: Added (BLAST+ Command Line Applications).	2018-12-24 10:53:59 +07:00
ncbi-rmblastn	academic/ncbi-rmblastn: Update DEP.	2018-12-24 22:16:58 +07:00
ncview	academic/ncview: Added (a netCDF visual browser).	2018-04-07 08:13:13 +07:00
ngspice	academic/ngspice: Updated for version 29.	2019-01-05 07:49:15 +07:00
novocraft	academic/novocraft: Updated for version 3.09.01.	2018-12-01 07:27:49 +07:00
octave	academic/octave: Updated for version 4.4.1.	2019-01-05 07:49:30 +07:00
OpenFOAM	academic/OpenFOAM: Updated for version 6.	2018-07-17 07:15:42 +07:00
pal2nal
paml	academic/paml: Updated for version 4.9h.	2018-06-17 23:34:22 +01:00
pamlX	academic/pamlX: Updated to build with paml-4.9h.	2018-06-17 23:41:03 +01:00
papi
pari	academic/pari: Updated for version 2.11.1.	2019-01-05 07:49:21 +07:00
parmetis	academic/parmetis: Update info.	2018-05-29 08:25:33 +07:00
patsy
pcb
perlprimer	academic/perlprimer: Updated for version 1.2.3_f7d3bd0.	2018-07-08 19:40:22 +01:00
PhyML	academic/PhyML: Updated for version 3.3.20180621.	2018-07-08 19:25:48 +01:00
pianobooster
plasmidomics
prank-msa
primer3	academic/primer3: Updated for version 2.4.0.	2018-07-08 19:42:08 +01:00
pspp	academic/pspp: Updated for version 1.2.0.	2018-11-27 08:22:03 +07:00
pulseview	academic/pulseview: Updated for version 0.4.1.	2018-12-16 16:24:58 +07:00
PyAMG
pyCRAC	academic/pyCRAC: Updated for version 1.3.3.	2018-12-01 07:27:48 +07:00
pyfits	academic/pyfits: Update homepage.	2018-12-01 07:27:41 +07:00
pysam	academic/pysam: Updated for version 0.15.1.	2018-12-01 07:27:48 +07:00
qalculate-gtk	academic/qalculate-gtk: Updated for version 2.8.2	2018-12-09 13:17:30 +07:00
qcl
qhull
qrupdate	academic/qrupdate: Update URLs and patches.	2019-01-05 07:49:30 +07:00
QtiPlot	academic/QtiPlot: Updated homepage.	2018-05-02 22:58:31 +01:00
qtoctave
qucs	academic/qucs: Noted orphan status (no SBo maintainer).	2018-06-23 08:44:12 +07:00
R	academic/R: Updated for version 3.5.1.	2018-07-21 06:53:34 +07:00
rbio	academic/rbio: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:29 +07:00
reduce-algebra	academic/reduce-algebra: Updated for version 20180920svn4765.	2018-09-21 21:40:29 +01:00
RepeatMasker	academic/RepeatMasker: Updated for version 4.0.8.	2018-12-24 08:55:30 +07:00
root
sage	academic/sage: Unmaintained.	2018-08-11 07:23:09 +07:00
sage-bin	academic/sage-bin: Added (python based mathematics software).	2018-09-15 17:50:08 +01:00
samtools	academic/samtools: Updated for version 1.9 + new maintainer.	2019-01-05 07:49:17 +07:00
samtools-legacy	academic/samtools-legacy: Added (Sequence Alignment/Map Tools).	2018-12-24 10:55:05 +07:00
scidavis	academic/scidavis: Patched to fix crashes.	2018-08-02 19:40:39 +07:00
scilab	academic/scilab: Updated for version 6.0.1.	2018-08-11 07:23:09 +07:00
scipy	academic/scipy: Switch homepage to https.	2018-06-02 11:24:14 +01:00
scipy3
seaview	academic/seaview: Updated for version 4.7.	2018-06-17 23:42:33 +01:00
sequence-analysis
Shark	academic/Shark: Added (machine learning library).	2018-04-28 06:40:13 +07:00
sigrok-cli	academic/sigrok-cli: Updated for version 0.7.1.	2018-12-16 16:24:13 +07:00
siril
slatec
smath-studio	academic/smath-studio: Changed maintainer.	2018-06-23 08:44:12 +07:00
snpEff
solfege
spades	academic/spades: Updated for version 3.13.0.	2018-12-24 10:55:58 +07:00
speedcrunch
spiceopus
spidey
spqr	academic/spqr: Updated for version 2.0.9.	2019-01-05 07:49:30 +07:00
squizz
staden
STAR	academic/STAR: Updated for version 2.6.1d.	2018-11-24 12:35:25 +07:00
stellarium	academic/stellarium: Updated for version 0.18.1.	2018-08-11 07:23:05 +07:00
stringtie	academic/stringtie: Added (Assembler of RNA-Seq alignments).	2018-12-24 22:16:51 +07:00
suitesparse	academic/suitesparse: Updated for version 5.3.0	2018-07-07 06:54:25 +07:00
suitesparseconfig	academic/suitesparseconfig: Updated for version 5.4.0.	2019-01-05 07:49:27 +07:00
sundials	academic/sundials: Updated for version 3.1.1.	2018-08-02 19:22:21 +07:00
sword	academic/sword: Fix for newer icu4c.	2018-04-27 01:22:08 +07:00
sword-data-kjv
sympy
t_coffee
tabix
tabix-legacy	academic/tabix-legacy: Added (Generic indexer).	2018-12-24 22:16:45 +07:00
tilem
tilem2
tkgate
topdraw
tophat
TreeGraph	academic/TreeGraph: Added (A feature rich phylogenetic tree editor).	2018-06-23 08:44:00 +07:00
treeviewx	academic/treeviewx: Added (Program to display phylogenetic trees).	2018-07-10 10:07:47 +01:00
trfind
trimmomatic	academic/trimmomatic: Added (Trimming Tool).	2018-12-24 22:16:59 +07:00
tuxmath	academic/tuxmath: Update homepage.	2018-07-17 07:15:40 +07:00
tuxtype2	academic/tuxtype2: Update homepage.	2018-07-17 07:15:40 +07:00
ucsc-blat
ugene	academic/ugene: Updated for version 1.31.1.	2018-12-24 22:17:00 +07:00
umfpack	academic/umfpack: Updated for version 5.7.8.	2019-01-05 07:49:29 +07:00
units	academic/units: Updated for version 2.18.	2018-11-10 07:46:57 +07:00
vcftools	academic/vcftools: Updated for version 0.1.16.	2018-12-24 22:16:53 +07:00
verilog
veusz	academic/veusz: Fix build against new Qt5.	2018-09-23 06:11:51 +07:00
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel	academic/wehi-weasel: Updated for version 3.5.0.17.	2018-12-24 22:16:53 +07:00
WEVOTE	academic/WEVOTE: Added (WEighted VOting Taxonomic idEntification).	2018-12-24 08:52:55 +07:00
wmcalc	academic/wmcalc: Updated for version 0.7.	2018-09-15 19:23:41 +01:00
WordNet	academic/WordNet: Switch homepage to https.	2018-03-17 13:58:49 +00:00
wxmacmolplt
wxMaxima	academic/wxMaxima: Switch homepage to https.	2018-10-06 07:25:18 +07:00
xcircuit
xephem
xflr5	academic/xflr5: Updated for version 6.42.	2018-06-23 02:22:22 +07:00
xfoil
xiphos	academic/xiphos: Updated for version 4.1.0.	2018-04-28 06:40:13 +07:00
xoscope
Xyce	academic/Xyce: Update info.	2018-05-29 08:28:21 +07:00
ZeGrapher
zotero	academic/zotero: Updated for version 5.0.58 + new maintainer.	2018-12-10 13:31:02 +07:00