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13 lines
625 B
Text
13 lines
625 B
Text
RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST
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suite. The primary difference between this distribution and the NCBI
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distribution is the addition of a new program "rmblastn" for use with
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RepeatMasker and RepeatModeler.
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RMBlast supports RepeatMasker searches by adding a few necessary
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features to the stock NCBI blastn program. These include:
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- Support for custom matrices ( without KA-Statistics )
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- Support for cross_match-like complexity adjusted scoring
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(Cross_match is Phil Green's seeded smith-waterman search algorithm:
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www.phrap.org )
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- Support for cross_match-like masklevel filtering.
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