William PC 5149d3f60b academic/3D-ICE: Added (Thermal Emulator Library). ... Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2022-12-03 11:30:33 +07:00
..
3D-ICE	academic/3D-ICE: Added (Thermal Emulator Library).	2022-12-03 11:30:33 +07:00
abntex
aenig4
aeskulap	academic/aeskulap: Fix shebang.	2022-04-09 15:45:58 +07:00
aline
aliview	academic/aliview: Updated for version 1.28.	2022-07-29 21:57:48 +07:00
AlphaPlot	academic/AlphaPlot: Added (data analysis and visualization)	2022-04-30 13:51:47 +07:00
amd	academic/amd: Change i486 to i586	2022-06-07 02:23:02 -04:00
amplicon
amplifx	academic/amplifx: Fix download URL.	2022-04-02 12:20:16 -04:00
antiprism	academic/antiprism: Change i486 to i586	2022-06-07 02:23:02 -04:00
archaeopteryx
aris	academic/aris: New maintainer. Update patch.	2022-08-13 10:40:37 +07:00
arka
armadillo	academic/armadillo: Fix download URL, doc dir.	2022-04-02 12:27:10 -04:00
arpack	academic/arpack: Change i486 to i586	2022-06-07 02:23:02 -04:00
arpack-ng	academic/arpack-ng: Change i486 to i586	2022-06-07 02:23:02 -04:00
artha
avl
avogadroapp	academic/avogadroapp: Updated for version 1.97.0.	2022-08-13 10:40:39 +07:00
avogadrolibs	academic/avogadrolibs: Updated for version 1.97.0.	2022-08-13 10:40:39 +07:00
bcftools	academic/bcftools: Upgrade to version 1.16	2022-10-15 09:25:31 +07:00
bedGraphToBigWig	academic/bedGraphToBigWig: Strip binary.	2022-04-04 12:54:04 -04:00
bedtools
biblesync
bibletime	academic/bibletime: Update email address.	2022-06-09 13:19:35 -04:00
bibus
biopython	academic/biopython: Fix deps.	2022-11-12 22:33:12 +07:00
boinc	academic/boinc: fixed incorrect variable name	2022-11-26 09:11:51 +07:00
bowtie	academic/bowtie: Updated for version 1.3.1.	2022-10-15 10:47:26 +07:00
bowtie2	academic/bowtie2: ugraded to version 2.5.0	2022-11-24 22:13:28 +07:00
bowtie2-legacy
bpp-core	academic/bpp-core: Added (Bio++ Core Library)	2022-09-08 08:11:03 +01:00
bpp-phyl	academic/bpp-phyl: Added (Bio++ Phylogenetic Library)	2022-09-08 08:11:03 +01:00
bpp-phyl-omics	academic/bpp-phyl-omics: Added (Bio++ Phylogenetic Omics Library)	2022-09-08 08:11:04 +01:00
bpp-popgen	academic/bpp-popgen: Added (Bio++ Population Genetics Library)	2022-09-08 08:11:04 +01:00
bpp-seq	academic/bpp-seq: Added (Bio++ Sequence library)	2022-09-08 08:11:03 +01:00
bpp-seq-omics	academic/bpp-seq-omics: Added (Bio++ Sequence Omics Library)	2022-09-08 08:11:03 +01:00
bpp1.9-numcalc	academic/bpp1.9-numcalc: Added (Bio++ 1.9 NumCalc Library)	2022-09-09 02:55:53 +01:00
bpp1.9-phyl	academic/bpp1.9-phyl: Added (Bio++ 1.9 Phyl Library)	2022-09-09 03:07:45 +01:00
bpp1.9-seq	academic/bpp1.9-seq: Added (Bio++ 1.9 Seq Library)	2022-09-09 02:58:46 +01:00
bpp1.9-utils	academic/bpp1.9-utils: Added (Bio++ 1.9 Utils Library)	2022-09-09 02:53:27 +01:00
bppsuite	academic/bppsuite: Added (Bio++ program suite)	2022-09-08 08:11:04 +01:00
btf	academic/btf: Change i486 to i586	2022-06-07 02:23:03 -04:00
bwa
cadabra2	academic/cadabra2: Updated for version 2.4.2.1.	2022-10-29 09:44:58 +07:00
CAFS_divergence
calc
calcoo
camd	academic/camd: Change i486 to i586	2022-06-07 02:23:03 -04:00
cap3	academic/cap3: DOWLOAD updated.	2022-08-06 20:16:08 +07:00
CAPS_coevolution
cblas	academic/cblas: Updated for version 3.11.0	2022-11-26 09:11:52 +07:00
ccolamd	academic/ccolamd: Change i486 to i586	2022-06-07 02:23:03 -04:00
cdo	academic/cdo: Updated to version 2.1.0	2022-10-16 07:24:12 +07:00
celestia
chartgeany
chemtool
cholmod	academic/cholmod: Change i486 to i586	2022-06-07 02:23:03 -04:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS
cistrome-mdseqpos	academic/cistrome-mdseqpos: Fix deps.	2022-11-12 22:33:12 +07:00
clark-ugene
cld2
clustalo
clustalw
clustalx	academic/clustalx: Updated to use qmake-qt5. BUILD bumped.	2022-08-06 20:16:07 +07:00
colamd	academic/colamd: Change i486 to i586	2022-06-07 02:23:03 -04:00
colin
convertall	academic/convertall: Fix docs.	2022-04-05 12:28:40 -04:00
copasi	academic/copasi: Updated for version 4.38.268.	2022-12-03 09:09:21 +07:00
cryptominisat	academic/cryptominisat: Updated for version 5.11.3.	2022-10-15 10:47:22 +07:00
csparse	academic/csparse: Change i486 to i586	2022-06-07 02:23:03 -04:00
cufflinks
cutadapt
cvc4
cxsparse	academic/cxsparse: Change i486 to i586	2022-06-07 02:23:03 -04:00
dakota	academic/dakota: Updated for version 6.16.0.	2022-07-30 11:26:22 +07:00
Data2FCS
datamash	academic/datamash: Updated for version 1.8.	2022-09-04 04:44:58 +01:00
DendroPy	academic/DendroPy: Updated for version 4.5.1.	2022-09-08 08:11:03 +01:00
diamond
dimod	academic/dimod: Added (A shared API for samplers)	2022-11-12 22:32:58 +07:00
DRAMPower	academic/DRAMPower: Fix github tarball handling.	2022-11-26 09:11:46 +07:00
DRAMSim2	academic/DRAMSim2: Added (A cycle accurate DRAM simulator)	2022-10-15 10:47:28 +07:00
DRAMsim3	academic/DRAMsim3: Fix github tarball handling.	2022-11-05 21:15:16 +07:00
DRAMSys	academic/DRAMSys: Added (DRAM subsystem).	2022-12-03 11:26:39 +07:00
ds9
dwave-cloud-client	academic/dwave-cloud-client: Added (REST interface for D-Wave API)	2022-11-12 22:32:58 +07:00
dwave-greedy	academic/dwave-greedy: Added (steepest descent solver for (BQM))	2022-11-12 22:32:58 +07:00
dwave-hybrid	academic/dwave-hybrid: Added (Hybrid Async Decomposition Sampler)	2022-11-12 22:32:59 +07:00
dwave-inspector	academic/dwave-inspector: Added (visualize D-Wave structured solver)	2022-11-12 22:32:59 +07:00
dwave-neal	academic/dwave-neal: Added (a simulated annealing sampler)	2022-11-12 22:32:59 +07:00
dwave-networkx	academic/dwave-networkx: Added (D-Wave Systems network exploration)	2022-11-12 22:32:59 +07:00
dwave-ocean-sdk	academic/dwave-ocean-sdk: Fix deps.	2022-11-19 10:08:09 +07:00
dwave-preprocessing	academic/dwave-preprocessing: Added (binary quadratic models tools)	2022-11-12 22:32:59 +07:00
dwave-system	academic/dwave-system: Added (basic API for D-Wave system)	2022-11-12 22:32:59 +07:00
dwave-tabu	academic/dwave-tabu: Added (C/C++ implementation of MST2 for QUBO)	2022-11-12 22:32:59 +07:00
dwavebinarycsp	academic/dwavebinarycsp: Added (contruct binary quadratic models)	2022-11-12 22:32:58 +07:00
easy_spice
ed-v6
edsim51di
elk	academic/elk: Fix SlackBuild permissions.	2022-11-12 22:33:05 +07:00
EMBASSY	academic/EMBASSY: Update binaries location.	2022-07-29 22:21:46 +07:00
EMBOSS	academic/EMBOSS: Update binaries location.	2022-07-29 22:20:39 +07:00
engauge
ent	academic/ent: Update email address.	2022-06-08 12:25:40 -04:00
eprover
equalx	academic/equalx: Update email address.	2022-06-08 12:25:40 -04:00
ess
evopedia_qt
exonerate
extrema
fann	academic/fann: Change i486 to i586	2022-06-07 02:23:03 -04:00
fastqc
FCSalyzer
fet	academic/fet: Updated for version 6.7.1.	2022-11-12 22:33:04 +07:00
fiji	academic/fiji: Updated for version 20220414_1745.	2022-08-06 20:16:08 +07:00
finchtv
fityk
flann
flexbar
free42
FreeFem	academic/FreeFem: Updated for version 4.11.	2022-04-24 01:47:24 +07:00
g3data
Gabedit	academic/Gabedit: Install references.	2022-07-09 10:06:07 +07:00
galculator
gaw3
Gblocks
gchemutils
gcompris-qt	academic/gcompris-qt: Updated for version 2.4.	2022-04-24 01:47:19 +07:00
geda-gaf
gelemental	academic/gelemental: Updated for version 2.0.1.	2022-10-15 10:47:27 +07:00
gem5	academic/gem5: Added (open-source system-level & CPU simulator)	2022-10-29 10:28:33 +07:00
geneconv
genius
genometools	academic/genometools: Updated for version 1.6.2.	2022-09-04 04:51:14 +01:00
genpak	academic/genpak: Fix docs.	2022-04-09 15:45:11 +07:00
GeoGebra
geomview	academic/geomview: Change i486 to i586	2022-06-07 02:23:03 -04:00
gerbv
getdp	academic/getdp: Updated for version 3.5.0.	2022-08-13 10:40:35 +07:00
getfem	academic/getfem: Fix deps.	2022-11-12 22:33:19 +07:00
ggobi
ghemical
glpk
glvis	academic/glvis: Added (finite element visualization tool).	2022-11-25 14:22:50 +07:00
gmsh	academic/gmsh: Updated for version 4.10.5.	2022-08-13 10:40:35 +07:00
gnucap
gp2fasta	academic/gp2fasta: Change i486 to i586	2022-06-07 02:23:03 -04:00
gpredict
grace	academic/grace: Update download url.	2022-09-10 15:19:08 +07:00
gresistor	academic/gresistor: Change i486 to i586	2022-06-07 02:23:03 -04:00
gretl
gri
Gridcoin-Research	academic/Gridcoin-Research: Updated for version 5.4.0.0	2022-08-13 10:40:41 +07:00
gromacs	academic/gromacs: Added (gromacs project)	2022-10-01 09:01:15 +07:00
grpn	academic/grpn: Change i486 to i586	2022-06-07 02:23:03 -04:00
gspiceui
gtkwave
gtypist	academic/gtypist: Updated maintainer info.	2022-11-18 22:02:50 +07:00
gwyddion	academic/gwyddion: Updated for version 2.62.	2022-11-12 22:32:56 +07:00
h5utils
harminv
HMMER
hyphy	academic/hyphy: Updated for version 2.5.42.	2022-10-15 10:47:27 +07:00
IGV	academic/IGV: Updated for version 2.14.1.	2022-10-15 10:47:27 +07:00
io_lib
iqtree	academic/iqtree: Added (Efficient phylogenomic software by ML)	2022-09-09 04:23:03 +01:00
irsim
isoelectric-point	academic/isoelectric-point: Change i486 to i586	2022-06-07 02:23:04 -04:00
iTest
itex2mml
ITK
jalview	academic/jalview: Updated for version 2.11.2.4.	2022-10-15 10:47:27 +07:00
jellyfish_k-mer
jpicedt	academic/jpicedt: Change i486 to i586	2022-06-07 02:23:04 -04:00
jugglinglab
karma	academic/karma: Allow ARCH=i586 in environment.	2022-03-20 20:45:13 +07:00
kiwisolver
klavaro
klu	academic/klu: Change i486 to i586	2022-06-07 02:23:04 -04:00
knime
kraken
Kst	academic/Kst: Fix deps.	2022-11-12 22:33:14 +07:00
ktikz
kurso
labplot2	academic/labplot2: Updated for version 2.9.0.	2022-05-14 19:28:00 +07:00
ladr
lalnview
lapack95
lapacke	academic/lapacke: Updated for version 3.11.0	2022-11-26 09:11:52 +07:00
latex2html
ldl	academic/ldl: Change i486 to i586	2022-06-07 02:23:04 -04:00
libghemical	academic/libghemical: Change i486 to i586	2022-06-07 02:23:04 -04:00
link-grammar	academic/link-grammar: Change i486 to i586	2022-06-07 02:23:04 -04:00
locarna
lpsolve
mafft	academic/mafft: Updated for version 7.505.	2022-09-08 08:11:03 +01:00
magic
mathics	academic/mathics: Fix deps.	2022-11-12 22:33:12 +07:00
mathjax2
mathomatic	academic/mathomatic: Change i486 to i586	2022-06-07 02:23:04 -04:00
matio
maxima	academic/maxima: Updated for version 5.46.0.	2022-10-08 09:12:41 +07:00
meep
megax	academic/megax: Updated for version 11.0.11_1.	2022-08-06 20:16:04 +07:00
meme-db-gomo
meme-db-motif	academic/meme-db-motif: Updated for version 12.23.	2022-09-04 04:57:25 +01:00
meme-db-tgene
meme-suite	academic/meme-suite: Updated for version 5.4.1.	2022-09-04 05:41:14 +01:00
mendeleydesktop	academic/mendeleydesktop: Change i486 to i586	2022-06-07 02:23:04 -04:00
metalwalls	academic/metalwalls: Added (Molecular modelling systems).	2022-10-19 01:02:36 +07:00
MetaPhlAn2	academic/MetaPhlAn2: Fix ARCH and deps.	2022-11-12 22:33:20 +07:00
metis	academic/metis: Change i486 to i586	2022-06-07 02:23:04 -04:00
mfem	academic/mfem: Added (library for finite element methods).	2022-11-20 09:37:41 +07:00
minorminer	academic/minorminer: Added (heuristic tool for minor embedding).	2022-11-12 10:48:01 +07:00
mkDSSP
molequeue	academic/molequeue: Updated for version 0.9.0.	2022-04-24 01:47:09 +07:00
mpb
mrbayes
mumsa	academic/mumsa: Added (A tool to assess MSA quality)	2022-09-25 13:59:42 +07:00
muscle
muscle5	academic/muscle5: Added (MUSCLE 5: Next-generation MUSCLE)	2022-10-15 10:47:28 +07:00
ncbi-blast
ncbi-blast+	academic/ncbi-blast+: Updated for version 2.13.0.	2022-09-04 14:40:01 +01:00
ncbi-rmblastn	academic/ncbi-rmblastn: Allow ARCH=i586 in environment.	2022-03-20 20:45:13 +07:00
nco	academic/nco: Updated for version 5.1.3.	2022-12-03 09:09:18 +07:00
ncview
ngspice	academic/ngspice: Updated for version 38.	2022-11-05 21:15:04 +07:00
novocraft
octave	academic/octave: Updated for version 7.3.0	2022-11-12 22:33:22 +07:00
openboard	academic/openboard: Fix build with newer ffmpeg.	2022-10-13 10:19:15 +07:00
OpenFOAM	academic/OpenFOAM: Updated for version 10.	2022-07-29 22:50:17 +07:00
OpenMM	academic/OpenMM: Fix github tarball handling.	2022-11-05 21:15:16 +07:00
pal2nal
paml	academic/paml: Remove stray symlink.	2022-10-20 23:32:13 +07:00
pamlX	academic/pamlX: Rebuild for paml update.	2022-10-15 10:47:28 +07:00
papi
pari
parmetis	academic/parmetis: Change i486 to i586	2022-06-07 02:23:04 -04:00
patsy	academic/patsy: Fix deps.	2022-11-12 22:33:12 +07:00
pcalc
pcb
penaltymodel	academic/penaltymodel: Added (penalty model solver).	2022-11-12 10:49:57 +07:00
perlprimer
petsc	academic/petsc: Fix deps.	2022-11-12 22:33:16 +07:00
PhyML	academic/PhyML: Updated for version 3.3.20220408.	2022-09-04 13:49:57 +01:00
pianobooster	academic/pianobooster: Update email address.	2022-06-08 12:25:51 -04:00
plasmidomics
plus42	academic/plus42: Updated for version 1.0.14.	2022-11-24 21:27:28 +07:00
prank-msa	academic/prank-msa: Added (probabilistic multiple alignment program)	2022-09-08 22:18:25 +01:00
primer3
pspp
pulseview
PyAMG	academic/PyAMG: Fix deps.	2022-11-12 22:33:11 +07:00
pyCRAC	academic/pyCRAC: Fix deps.	2022-11-12 22:33:16 +07:00
pyfits	academic/pyfits: Fix deps.	2022-11-12 22:33:13 +07:00
pysam	academic/pysam: upgraded to version 0.20.0	2022-11-24 22:15:19 +07:00
python2-kiwisolver	academic/python2-kiwisolver: Added (Cassowary algorithm)	2022-11-05 21:15:10 +07:00
python2-scipy	academic/python2-scipy: Added (math, science, & engineering py2 lib)	2022-11-05 21:15:09 +07:00
python3-scipy	academic/python3-scipy: Added (py3 math, science, and engineering)	2022-11-05 21:15:10 +07:00
qalculate-gtk
qcl
qhull
qrupdate	academic/qrupdate: Change i486 to i586	2022-06-07 02:23:04 -04:00
qucs	academic/qucs: Align to template.	2022-03-26 11:46:45 +13:00
R	academic/R: Updated for version 4.2.2.	2022-11-12 22:33:08 +07:00
ramulator	academic/ramulator: Fix github tarball handling.	2022-11-26 09:11:46 +07:00
RAxML
rbio	academic/rbio: Change i486 to i586	2022-06-07 02:23:04 -04:00
reduce-algebra
RepeatMasker
root	academic/root: Fix permissions on README and subdirs	2022-11-20 08:51:29 +07:00
rpy2	academic/rpy2: upgraded to version 3.5.6	2022-11-24 22:14:51 +07:00
sage
sage-bin	academic/sage-bin: Fix .info.	2022-05-28 09:11:22 +07:00
samtools	academic/samtools: Ugrade to version 1.16.1	2022-10-15 09:25:55 +07:00
samtools-legacy
scidavis	academic/scidavis: Updated for version 2.9.0.	2022-06-18 09:09:57 +07:00
scilab
seaview	academic/seaview: Updated for version 5.0.5.	2022-09-04 14:49:33 +01:00
seqkit	academic/seqkit: Updated for version 2.2.0.	2022-08-06 20:16:11 +07:00
SeqMonk	academic/SeqMonk: Updated for version 1.48.1.	2022-08-06 20:16:13 +07:00
sequence-analysis
Shark
sigrok-cli
SimEng	academic/SimEng: Fix github tarball handling.	2022-11-26 09:11:46 +07:00
siril
smath-studio
snpEff	academic/snpEff: Build cleanup.	2022-08-13 10:40:38 +07:00
solfege	academic/solfege: Change i486 to i586	2022-06-07 02:23:04 -04:00
spades	academic/spades: Updated for version 3.15.4.	2022-08-06 20:16:13 +07:00
speedcrunch
spiceopus	academic/spiceopus: Change i486 to i586	2022-06-07 02:23:05 -04:00
spidey
spqr	academic/spqr: Change i486 to i586	2022-06-07 02:23:05 -04:00
squizz
staden
STAR	academic/STAR: ugraded to version 2.7.10b	2022-11-24 22:14:26 +07:00
stellarium
stellarsolver	academic/stellarsolver: Added (Astrometric Plate Solver)	2022-08-20 10:06:38 +07:00
stringtie
SU2	academic/SU2: Mark as 64-bit only.	2022-03-26 01:20:12 +07:00
suitesparse	academic/suitesparse: Updated for version 5.11.0	2022-04-09 15:46:03 +07:00
suitesparseconfig	academic/suitesparseconfig: Change i486 to i586	2022-06-07 02:23:05 -04:00
sundials
sword	academic/sword: Updated for version 1.9.0.	2022-04-16 12:12:42 +07:00
sword-data-kjv	academic/sword-data-kjv: Updated for version 1.9.0_1.	2022-04-16 12:12:42 +07:00
t_coffee
tabix-legacy
tiemu
tilem
tilem2
tkgate	academic/tkgate: Change i486 to i586	2022-06-07 02:23:05 -04:00
topdraw
tophat
treebest-ensembl
TreeGraph
treeviewx
trfind
trimmomatic
tuxmath
tuxtype2	academic/tuxtype2: Change i486 to i586	2022-06-07 02:23:05 -04:00
ucsc-blat
ugene	academic/ugene: Updated for version 44.0.	2022-09-08 08:11:03 +01:00
umfpack	academic/umfpack: Change i486 to i586	2022-06-07 02:23:05 -04:00
units	academic/units: Updated for version 2.22	2022-09-10 15:19:08 +07:00
vCAPS_coevolution	academic/vCAPS_coevolution: Added (Coevolution Analysis)	2022-09-09 03:10:09 +01:00
vcftools
verilator
verilog	academic/verilog: Fix download url.	2022-11-05 12:56:05 +07:00
veusz	academic/veusz: Fix deps.	2022-11-12 22:33:18 +07:00
ViennaRNA	academic/ViennaRNA: Updated for version 2.5.1.	2022-06-18 09:10:06 +07:00
voro++	academic/voro++: Added (A 3D Voronoi cell software library)	2022-10-15 10:47:38 +07:00
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel
WEVOTE
wmcalc	academic/wmcalc: Update email address.	2022-06-08 12:25:51 -04:00
WordNet	academic/WordNet: Change i486 to i586	2022-06-07 02:23:02 -04:00
wxMaxima
x48	academic/x48: Added (HP48 Calculator emulator)	2022-04-30 13:51:49 +07:00
xcircuit	academic/xcircuit: Change i486 to i586	2022-06-07 02:23:05 -04:00
xephem
xflr5	academic/xflr5: Updated for version 6.54.	2022-04-16 12:12:52 +07:00
xfoil
xiphos	academic/xiphos: Fix build.	2022-04-16 12:12:49 +07:00
xoscope	academic/xoscope: Change i486 to i586	2022-06-07 02:23:05 -04:00
xsimd	academic/xsimd: Updated for version 10.0.0.	2022-12-03 09:09:23 +07:00
yices2	academic/yices2: Added (Satisfiability modulo theories solver).	2022-11-05 12:46:15 +07:00
z3	academic/z3: Updated for version 4.11.2.	2022-10-08 09:12:54 +07:00
ZeGrapher
zotero	academic/zotero: Updated for version 6.0.18.	2022-11-19 10:08:07 +07:00