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slackbuilds_ponce/academic/spqr/autotoolize.diff
Kyle Guinn dd0696e586 academic/spqr: Updated for version 2.0.1. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
2015-06-14 07:55:36 +07:00

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diff --git a/Demo/Makefile.am b/Demo/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Demo/Makefile.am
@@ -0,0 +1,111 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
+LDADD = $(top_builddir)/Source/libspqr.la
+
+EXTRA_DIST = \
+ README.txt \
+ qrdemo_out.txt \
+ qrdemoc_out.txt
+
+check_PROGRAMS = \
+ qrsimple \
+ qrsimplec \
+ qrdemo \
+ qrdemoc
+
+qrsimple_SOURCES = qrsimple.cpp
+qrsimplec_SOURCES = qrsimplec.c
+qrsimplec_CFLAGS = $(AM_CFLAGS) -ansi
+qrdemo_SOURCES = qrdemo.cpp
+qrdemoc_SOURCES = qrdemoc.c
+qrdemoc_CFLAGS = $(AM_CFLAGS) -ansi
+
+MATRICES = \
+ $(top_srcdir)/Matrix/GD01_b.mtx \
+ $(top_srcdir)/Matrix/GD06_theory.mtx \
+ $(top_srcdir)/Matrix/GD98_a.mtx \
+ $(top_srcdir)/Matrix/LFAT5.mtx \
+ $(top_srcdir)/Matrix/Ragusa16.mtx \
+ $(top_srcdir)/Matrix/Tina_AskCal.mtx \
+ $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx \
+ $(top_srcdir)/Matrix/a0.mtx \
+ $(top_srcdir)/Matrix/a04.mtx \
+ $(top_srcdir)/Matrix/a1.mtx \
+ $(top_srcdir)/Matrix/a2.mtx \
+ $(top_srcdir)/Matrix/a4.mtx \
+ $(top_srcdir)/Matrix/ash219.mtx \
+ $(top_srcdir)/Matrix/b1_ss.mtx \
+ $(top_srcdir)/Matrix/bcspwr01.mtx \
+ $(top_srcdir)/Matrix/bfwa62.mtx \
+ $(top_srcdir)/Matrix/c2.mtx \
+ $(top_srcdir)/Matrix/c32.mtx \
+ $(top_srcdir)/Matrix/lfat5b.mtx \
+ $(top_srcdir)/Matrix/lp_share1b.mtx \
+ $(top_srcdir)/Matrix/lpi_galenet.mtx \
+ $(top_srcdir)/Matrix/lpi_itest6.mtx \
+ $(top_srcdir)/Matrix/r2.mtx \
+ $(top_srcdir)/Matrix/s32.mtx \
+ $(top_srcdir)/Matrix/west0067.mtx \
+ $(top_srcdir)/Matrix/young1c.mtx \
+ $(top_srcdir)/Matrix/lp_e226_transposed.mtx
+
+check-local: $(check_PROGRAMS) $(MATRICES)
+ -./qrsimple < $(top_srcdir)/Matrix/ash219.mtx
+ -./qrsimplec < $(top_srcdir)/Matrix/ash219.mtx
+ -./qrsimple < $(top_srcdir)/Matrix/west0067.mtx
+ -./qrsimplec < $(top_srcdir)/Matrix/west0067.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/a2.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/r2.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/a04.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/a2.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/west0067.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/c2.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/a0.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/lfat5b.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/bfwa62.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/LFAT5.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/b1_ss.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/bcspwr01.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/lpi_galenet.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/lpi_itest6.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/ash219.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/a4.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/s32.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/c32.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/lp_share1b.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/a1.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/GD06_theory.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/GD01_b.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/GD98_a.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/Ragusa16.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/young1c.mtx
+ -./qrdemo < $(top_srcdir)/Matrix/lp_e226_transposed.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/r2.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/a04.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/west0067.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/c2.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/a0.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/lfat5b.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/bfwa62.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/LFAT5.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/b1_ss.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/bcspwr01.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/lpi_galenet.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/lpi_itest6.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/ash219.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/a4.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/s32.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/c32.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/lp_share1b.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/a1.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/GD06_theory.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/GD01_b.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/GD98_a.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/Ragusa16.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/young1c.mtx
+ -./qrdemoc < $(top_srcdir)/Matrix/lp_e226_transposed.mtx
diff --git a/Doc/Makefile.am b/Doc/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Doc/Makefile.am
@@ -0,0 +1,28 @@
+EXTRA_DIST = \
+ ChangeLog \
+ README.txt \
+ gpl.txt
+
+dist_noinst_DATA = \
+ spqr_user_guide.tex \
+ spqr_user_guide.bib
+
+dist_pdf_DATA = \
+ spqr_user_guide.pdf \
+ algo_spqr.pdf \
+ spqr.pdf
+
+TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error
+BIB = BIBINPUTS="$(srcdir):" bibtex
+%.pdf: %.tex %.bbl
+ $(TEX) $*
+ while grep -q "Rerun to get cross-references right" $*.log; do \
+ $(TEX) $*; \
+ done
+%.bbl: %.aux %.bib
+ $(BIB) $*
+%.aux: %.tex
+ $(TEX) $*
+
+CLEANFILES = *.aux *.bbl *.blg *.log *.toc
+MAINTAINERCLEANFILES = $(dist_pdf_DATA)
diff --git a/Include/Makefile.am b/Include/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Include/Makefile.am
@@ -0,0 +1,5 @@
+pkginclude_HEADERS = \
+ SuiteSparseQR.hpp \
+ SuiteSparseQR_C.h \
+ SuiteSparseQR_definitions.h \
+ spqr.hpp
diff --git a/Makefile.am b/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Makefile.am
@@ -0,0 +1,5 @@
+SUBDIRS = Include Source Matrix Demo Doc
+EXTRA_DIST = README.txt
+
+pkgconfigdir = $(libdir)/pkgconfig
+pkgconfig_DATA = spqr.pc
diff --git a/Matrix/Makefile.am b/Matrix/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Matrix/Makefile.am
@@ -0,0 +1,36 @@
+EXTRA_DIST = \
+ README.txt
+
+dist_noinst_DATA = \
+ GD01_b.mtx \
+ GD06_theory.mtx \
+ GD98_a.mtx \
+ LFAT5.mtx \
+ Ragusa16.mtx \
+ Tina_AskCal.mtx \
+ Tina_AskCal_perm.mtx \
+ a0.mtx \
+ a04.mtx \
+ a1.mtx \
+ a2.mtx \
+ a4.mtx \
+ arrow.mtx \
+ ash219.mtx \
+ b1_ss.mtx \
+ bcspwr01.mtx \
+ bfwa62.mtx \
+ c2.mtx \
+ c32.mtx \
+ lfat5b.mtx \
+ lp_share1b.mtx \
+ lpi_galenet.mtx \
+ lpi_itest6.mtx \
+ pwr01b.mtx \
+ r2.mtx \
+ s32.mtx \
+ west0067.mtx \
+ young1c.mtx \
+ Franz6_id1959_aug.mtx \
+ Groebner_id2003_aug.mtx \
+ lp_e226.mtx \
+ lp_e226_transposed.mtx
diff --git a/Source/Makefile.am b/Source/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Source/Makefile.am
@@ -0,0 +1,54 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(TBB_CFLAGS) $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
+if !EXPERT
+AM_CPPFLAGS += -DNEXPERT
+endif
+if TBB
+AM_CPPFLAGS += -DHAVE_TBB
+endif
+
+lib_LTLIBRARIES = libspqr.la
+
+libspqr_la_SOURCES = \
+ SuiteSparseQR.cpp \
+ SuiteSparseQR_C.cpp \
+ SuiteSparseQR_expert.cpp \
+ SuiteSparseQR_qmult.cpp \
+ spqr_1colamd.cpp \
+ spqr_1factor.cpp \
+ spqr_1fixed.cpp \
+ spqr_analyze.cpp \
+ spqr_append.cpp \
+ spqr_assemble.cpp \
+ spqr_cpack.cpp \
+ spqr_csize.cpp \
+ spqr_cumsum.cpp \
+ spqr_debug.cpp \
+ spqr_factorize.cpp \
+ spqr_fcsize.cpp \
+ spqr_freefac.cpp \
+ spqr_freenum.cpp \
+ spqr_freesym.cpp \
+ spqr_front.cpp \
+ spqr_fsize.cpp \
+ spqr_happly.cpp \
+ spqr_happly_work.cpp \
+ spqr_hpinv.cpp \
+ spqr_kernel.cpp \
+ spqr_larftb.cpp \
+ spqr_maxcolnorm.cpp \
+ spqr_panel.cpp \
+ spqr_parallel.cpp \
+ spqr_rconvert.cpp \
+ spqr_rcount.cpp \
+ spqr_rhpack.cpp \
+ spqr_rmap.cpp \
+ spqr_rsolve.cpp \
+ spqr_shift.cpp \
+ spqr_stranspose1.cpp \
+ spqr_stranspose2.cpp \
+ spqr_tol.cpp \
+ spqr_trapezoidal.cpp \
+ spqr_type.cpp
+
+libspqr_la_LIBADD = $(TBB_LIBS) $(CHOLMOD_LIBS) $(SUITESPARSECONFIG_LIBS) $(LAPACK_LIBS) $(BLAS_LIBS) -lm
+libspqr_la_LDFLAGS = -no-undefined -release $(PACKAGE_VERSION)
diff --git a/ax_blas.m4 b/ax_blas.m4
new file mode 100644
--- /dev/null
+++ b/ax_blas.m4
@@ -0,0 +1,238 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_blas.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
+#
+# DESCRIPTION
+#
+# This macro looks for a library that implements the BLAS linear-algebra
+# interface (see http://www.netlib.org/blas/). On success, it sets the
+# BLAS_LIBS output variable to hold the requisite library linkages.
+#
+# To link with BLAS, you should link with:
+#
+# $BLAS_LIBS $LIBS $FLIBS
+#
+# in that order. FLIBS is the output variable of the
+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
+# sometimes necessary in order to link with F77 libraries. Users will also
+# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
+# reason.
+#
+# Many libraries are searched for, from ATLAS to CXML to ESSL. The user
+# may also use --with-blas=<lib> in order to use some specific BLAS
+# library <lib>. In order to link successfully, however, be aware that you
+# will probably need to use the same Fortran compiler (which can be set
+# via the F77 env. var.) as was used to compile the BLAS library.
+#
+# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is
+# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is
+# not found. If ACTION-IF-FOUND is not specified, the default action will
+# define HAVE_BLAS.
+#
+# LICENSE
+#
+# Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation, either version 3 of the License, or (at your
+# option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
+# Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along
+# with this program. If not, see <http://www.gnu.org/licenses/>.
+#
+# As a special exception, the respective Autoconf Macro's copyright owner
+# gives unlimited permission to copy, distribute and modify the configure
+# scripts that are the output of Autoconf when processing the Macro. You
+# need not follow the terms of the GNU General Public License when using
+# or distributing such scripts, even though portions of the text of the
+# Macro appear in them. The GNU General Public License (GPL) does govern
+# all other use of the material that constitutes the Autoconf Macro.
+#
+# This special exception to the GPL applies to versions of the Autoconf
+# Macro released by the Autoconf Archive. When you make and distribute a
+# modified version of the Autoconf Macro, you may extend this special
+# exception to the GPL to apply to your modified version as well.
+
+#serial 14
+
+AU_ALIAS([ACX_BLAS], [AX_BLAS])
+AC_DEFUN([AX_BLAS], [
+AC_PREREQ(2.50)
+AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
+AC_REQUIRE([AC_CANONICAL_HOST])
+ax_blas_ok=no
+
+AC_ARG_WITH(blas,
+ [AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
+case $with_blas in
+ yes | "") ;;
+ no) ax_blas_ok=disable ;;
+ -* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
+ *) BLAS_LIBS="-l$with_blas" ;;
+esac
+
+# Get fortran linker names of BLAS functions to check for.
+AC_F77_FUNC(sgemm)
+AC_F77_FUNC(dgemm)
+
+ax_blas_save_LIBS="$LIBS"
+LIBS="$LIBS $FLIBS"
+
+# First, check BLAS_LIBS environment variable
+if test $ax_blas_ok = no; then
+if test "x$BLAS_LIBS" != x; then
+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
+ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
+fi
+
+# BLAS linked to by default? (happens on some supercomputers)
+if test $ax_blas_ok = no; then
+ save_LIBS="$LIBS"; LIBS="$LIBS"
+ AC_MSG_CHECKING([if $sgemm is being linked in already])
+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
+
+# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes
+ BLAS_LIBS="-lopenblas"])
+fi
+
+# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(atlas, ATL_xerbla,
+ [AC_CHECK_LIB(f77blas, $sgemm,
+ [AC_CHECK_LIB(cblas, cblas_dgemm,
+ [ax_blas_ok=yes
+ BLAS_LIBS="-lcblas -lf77blas -latlas"],
+ [], [-lf77blas -latlas])],
+ [], [-latlas])])
+fi
+
+# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm,
+ [AC_CHECK_LIB(dgemm, $dgemm,
+ [AC_CHECK_LIB(sgemm, $sgemm,
+ [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
+ [], [-lblas])],
+ [], [-lblas])])
+fi
+
+# BLAS in Intel MKL library?
+if test $ax_blas_ok = no; then
+ # MKL for gfortran
+ if test x"$ac_cv_fc_compiler_gnu" = xyes; then
+ # 64 bit
+ if test $host_cpu = x86_64; then
+ AC_CHECK_LIB(mkl_gf_lp64, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread])
+ # 32 bit
+ elif test $host_cpu = i686; then
+ AC_CHECK_LIB(mkl_gf, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_gf -lmkl_sequential -lmkl_core -lpthread])
+ fi
+ # MKL for other compilers (Intel, PGI, ...?)
+ else
+ # 64-bit
+ if test $host_cpu = x86_64; then
+ AC_CHECK_LIB(mkl_intel_lp64, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread])
+ # 32-bit
+ elif test $host_cpu = i686; then
+ AC_CHECK_LIB(mkl_intel, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_intel -lmkl_sequential -lmkl_core -lpthread])
+ fi
+ fi
+fi
+# Old versions of MKL
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread])
+fi
+
+# BLAS in Apple vecLib library?
+if test $ax_blas_ok = no; then
+ save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS"
+ AC_MSG_CHECKING([for $sgemm in -framework vecLib])
+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
+
+# BLAS in Alpha CXML library?
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"])
+fi
+
+# BLAS in Alpha DXML library? (now called CXML, see above)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"])
+fi
+
+# BLAS in Sun Performance library?
+if test $ax_blas_ok = no; then
+ if test "x$GCC" != xyes; then # only works with Sun CC
+ AC_CHECK_LIB(sunmath, acosp,
+ [AC_CHECK_LIB(sunperf, $sgemm,
+ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
+ ax_blas_ok=yes],[],[-lsunmath])])
+ fi
+fi
+
+# BLAS in SCSL library? (SGI/Cray Scientific Library)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"])
+fi
+
+# BLAS in SGIMATH library?
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(complib.sgimath, $sgemm,
+ [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
+fi
+
+# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm,
+ [AC_CHECK_LIB(essl, $sgemm,
+ [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
+ [], [-lblas $FLIBS])])
+fi
+
+# Generic BLAS library?
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"])
+fi
+
+AC_SUBST(BLAS_LIBS)
+
+LIBS="$ax_blas_save_LIBS"
+
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
+if test x"$ax_blas_ok" = xyes; then
+ ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
+ :
+else
+ ax_blas_ok=no
+ $2
+fi
+])dnl AX_BLAS
diff --git a/ax_lapack.m4 b/ax_lapack.m4
new file mode 100644
--- /dev/null
+++ b/ax_lapack.m4
@@ -0,0 +1,131 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_lapack.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
+#
+# DESCRIPTION
+#
+# This macro looks for a library that implements the LAPACK linear-algebra
+# interface (see http://www.netlib.org/lapack/). On success, it sets the
+# LAPACK_LIBS output variable to hold the requisite library linkages.
+#
+# To link with LAPACK, you should link with:
+#
+# $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS
+#
+# in that order. BLAS_LIBS is the output variable of the AX_BLAS macro,
+# called automatically. FLIBS is the output variable of the
+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
+# sometimes necessary in order to link with F77 libraries. Users will also
+# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
+# reason.
+#
+# The user may also use --with-lapack=<lib> in order to use some specific
+# LAPACK library <lib>. In order to link successfully, however, be aware
+# that you will probably need to use the same Fortran compiler (which can
+# be set via the F77 env. var.) as was used to compile the LAPACK and BLAS
+# libraries.
+#
+# ACTION-IF-FOUND is a list of shell commands to run if a LAPACK library
+# is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it
+# is not found. If ACTION-IF-FOUND is not specified, the default action
+# will define HAVE_LAPACK.
+#
+# LICENSE
+#
+# Copyright (c) 2009 Steven G. Johnson <stevenj@alum.mit.edu>
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation, either version 3 of the License, or (at your
+# option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
+# Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along
+# with this program. If not, see <http://www.gnu.org/licenses/>.
+#
+# As a special exception, the respective Autoconf Macro's copyright owner
+# gives unlimited permission to copy, distribute and modify the configure
+# scripts that are the output of Autoconf when processing the Macro. You
+# need not follow the terms of the GNU General Public License when using
+# or distributing such scripts, even though portions of the text of the
+# Macro appear in them. The GNU General Public License (GPL) does govern
+# all other use of the material that constitutes the Autoconf Macro.
+#
+# This special exception to the GPL applies to versions of the Autoconf
+# Macro released by the Autoconf Archive. When you make and distribute a
+# modified version of the Autoconf Macro, you may extend this special
+# exception to the GPL to apply to your modified version as well.
+
+#serial 7
+
+AU_ALIAS([ACX_LAPACK], [AX_LAPACK])
+AC_DEFUN([AX_LAPACK], [
+AC_REQUIRE([AX_BLAS])
+ax_lapack_ok=no
+
+AC_ARG_WITH(lapack,
+ [AS_HELP_STRING([--with-lapack=<lib>], [use LAPACK library <lib>])])
+case $with_lapack in
+ yes | "") ;;
+ no) ax_lapack_ok=disable ;;
+ -* | */* | *.a | *.so | *.so.* | *.o) LAPACK_LIBS="$with_lapack" ;;
+ *) LAPACK_LIBS="-l$with_lapack" ;;
+esac
+
+# Get fortran linker name of LAPACK function to check for.
+AC_F77_FUNC(cheev)
+
+# We cannot use LAPACK if BLAS is not found
+if test "x$ax_blas_ok" != xyes; then
+ ax_lapack_ok=noblas
+ LAPACK_LIBS=""
+fi
+
+# First, check LAPACK_LIBS environment variable
+if test "x$LAPACK_LIBS" != x; then
+ save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS"
+ AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS])
+ AC_TRY_LINK_FUNC($cheev, [ax_lapack_ok=yes], [LAPACK_LIBS=""])
+ AC_MSG_RESULT($ax_lapack_ok)
+ LIBS="$save_LIBS"
+ if test $ax_lapack_ok = no; then
+ LAPACK_LIBS=""
+ fi
+fi
+
+# LAPACK linked to by default? (is sometimes included in BLAS lib)
+if test $ax_lapack_ok = no; then
+ save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS"
+ AC_CHECK_FUNC($cheev, [ax_lapack_ok=yes])
+ LIBS="$save_LIBS"
+fi
+
+# Generic LAPACK library?
+for lapack in lapack lapack_rs6k; do
+ if test $ax_lapack_ok = no; then
+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
+ AC_CHECK_LIB($lapack, $cheev,
+ [ax_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS])
+ LIBS="$save_LIBS"
+ fi
+done
+
+AC_SUBST(LAPACK_LIBS)
+
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
+if test x"$ax_lapack_ok" = xyes; then
+ ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1])
+ :
+else
+ ax_lapack_ok=no
+ $2
+fi
+])dnl AX_LAPACK
diff --git a/configure.ac b/configure.ac
new file mode 100644
--- /dev/null
+++ b/configure.ac
@@ -0,0 +1,92 @@
+# -*- Autoconf -*-
+# Process this file with autoconf to produce a configure script.
+
+AC_PREREQ([2.69])
+AC_INIT([SPQR],[2.0.1],[DrTimothyAldenDavis@gmail.com],[spqr],[http://www.suitesparse.com/])
+AC_CONFIG_SRCDIR([Source/spqr_kernel.cpp])
+AC_CONFIG_HEADERS([config.h])
+AM_INIT_AUTOMAKE([foreign])
+LT_INIT
+
+# Checks for programs.
+AC_PROG_INSTALL
+AC_PROG_F77
+AC_PROG_CC
+AC_PROG_CXX
+AC_LANG([C++])
+
+AC_MSG_CHECKING([whether to use expert routines])
+AC_ARG_ENABLE([expert],
+ [AS_HELP_STRING(
+ [--disable-expert],
+ [compile without the min 2-norm solution option])],
+ [expert=$enableval],
+ [expert="yes"])
+AC_MSG_RESULT([$expert])
+
+AC_MSG_CHECKING([whether to use tbb])
+AC_ARG_WITH([tbb],
+ [AS_HELP_STRING(
+ [--without-tbb],
+ [do not use Intel Threading Building Blocks for multithreading])],
+ [tbb=$withval],
+ [tbb="yes"])
+AC_MSG_RESULT([$tbb])
+
+LIBS_SAVED=$LIBS
+
+# Checks for libraries.
+AC_CHECK_LIB([m], [sqrt])
+
+sinclude([ax_blas.m4])
+AX_BLAS
+if test "x$ax_blas_ok" != "xyes"; then
+ AC_MSG_ERROR([cannot find blas])
+fi
+
+sinclude([ax_lapack.m4])
+AX_LAPACK
+if test "x$ax_lapack_ok" != "xyes"; then
+ AC_MSG_ERROR([cannot find lapack])
+fi
+
+PKG_PROG_PKG_CONFIG
+PKG_CHECK_MODULES([SUITESPARSECONFIG],[suitesparseconfig],
+ [],
+ [AC_MSG_ERROR([cannot find suitesparseconfig])])
+PKG_CHECK_MODULES([CHOLMOD],[cholmod],
+ [],
+ [AC_MSG_ERROR([cannot find cholmod])])
+
+# Checks for header files.
+AC_CHECK_HEADERS([float.h stdlib.h])
+
+if test "x$tbb" = "xyes"; then
+ AC_CHECK_HEADERS([tbb/task_scheduler_init.h tbb/task.h])
+fi
+
+# Checks for typedefs, structures, and compiler characteristics.
+AC_TYPE_SIZE_T
+
+# Checks for library functions.
+AC_CHECK_FUNCS([sqrt])
+
+LIBS=$LIBS_SAVED
+
+if test "x$tbb" = "xyes"; then
+ AC_SUBST([TBB_CFLAGS], [""])
+ AC_SUBST([TBB_LIBS], ["-ltbb"])
+fi
+
+AM_CONDITIONAL([EXPERT], [test "x$expert" = "xyes"])
+AM_CONDITIONAL([TBB], [test "x$tbb" = "xyes"])
+
+AC_CONFIG_FILES([
+ spqr.pc
+ Makefile
+ Demo/Makefile
+ Doc/Makefile
+ Include/Makefile
+ Matrix/Makefile
+ Source/Makefile])
+AC_OUTPUT
diff --git a/spqr.pc.in b/spqr.pc.in
new file mode 100644
--- /dev/null
+++ b/spqr.pc.in
@@ -0,0 +1,13 @@
+prefix=@prefix@
+exec_prefix=@exec_prefix@
+libdir=@libdir@
+includedir=@includedir@
+
+Name: @PACKAGE_NAME@
+Description: Multifrontal sparse QR factorization
+Version: @PACKAGE_VERSION@
+URL: @PACKAGE_URL@
+Requires.private: cholmod suitesparseconfig
+Libs: -L${libdir} -lspqr
+Libs.private: @TBB_LIBS@ @LAPACK_LIBS@ @BLAS_LIBS@ -lm
+Cflags: -I${includedir}/spqr
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