mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-04 20:29:09 +01:00
121 lines
3.8 KiB
Bash
121 lines
3.8 KiB
Bash
#!/bin/sh
|
|
|
|
# Slackware build script for ncbi-blast+
|
|
# This takes the place of ncbi-blast-plus (2013-2019), which just
|
|
# repackaged the binaries provided by upstream.
|
|
|
|
# Copyright 2013-2020 Petar Petrov slackalaxy@gmail.com
|
|
# All rights reserved.
|
|
#
|
|
# Redistribution and use of this script, with or without modification, is
|
|
# permitted provided that the following conditions are met:
|
|
#
|
|
# 1. Redistributions of this script must retain the above copyright
|
|
# notice, this list of conditions and the following disclaimer.
|
|
#
|
|
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
|
|
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
|
|
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
|
|
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
|
|
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
|
|
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
|
|
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
|
|
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
|
|
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
|
|
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
|
|
|
PRGNAM=ncbi-blast+
|
|
VERSION=${VERSION:-2.10.0}
|
|
BUILD=${BUILD:-1}
|
|
TAG=${TAG:-_SBo}
|
|
|
|
DIRNAM=ncbi-blast
|
|
|
|
if [ -z "$ARCH" ]; then
|
|
case "$( uname -m )" in
|
|
i?86) ARCH=i586 ;;
|
|
arm*) ARCH=arm ;;
|
|
*) ARCH=$( uname -m ) ;;
|
|
esac
|
|
fi
|
|
|
|
CWD=$(pwd)
|
|
TMP=${TMP:-/tmp/SBo}
|
|
PKG=$TMP/package-$PRGNAM
|
|
OUTPUT=${OUTPUT:-/tmp}
|
|
|
|
if [ "$ARCH" = "i586" ]; then
|
|
SLKCFLAGS="-O2 -march=i586 -mtune=i686"
|
|
LIBDIRSUFFIX=""
|
|
elif [ "$ARCH" = "i686" ]; then
|
|
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
|
|
LIBDIRSUFFIX=""
|
|
elif [ "$ARCH" = "x86_64" ]; then
|
|
SLKCFLAGS="-O2 -fPIC"
|
|
LIBDIRSUFFIX="64"
|
|
else
|
|
SLKCFLAGS="-O2"
|
|
LIBDIRSUFFIX=""
|
|
fi
|
|
|
|
set -e
|
|
|
|
rm -rf $PKG
|
|
mkdir -p $TMP $PKG $OUTPUT
|
|
cd $TMP
|
|
rm -rf ${DIRNAM}-${VERSION}+-src
|
|
tar xvf $CWD/${DIRNAM}-${VERSION}+-src.tar.gz
|
|
cd ${DIRNAM}-${VERSION}+-src
|
|
chown -R root:root .
|
|
find -L . \
|
|
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
|
|
-o -perm 511 \) -exec chmod 755 {} \; -o \
|
|
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
|
|
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
|
|
|
|
cd c++
|
|
|
|
# NOTE! Some additional options we could consider are:
|
|
# --without-autodep \ # automatic generation of dependencies (GNU make)
|
|
# --without-makefile-auto-update \ # do not auto-update generated makefiles
|
|
# --without-caution \ # proceed without asking when in doubt
|
|
# --without-boost \ # do not use Boost
|
|
# The full list of options is available in c++/src/build-system/configure
|
|
|
|
# Do not specify the libraries dir by the default way (--libdir=/lib${LIBDIRSUFFIX}),
|
|
# because the libs will not be included in the package.
|
|
CFLAGS="$SLKCFLAGS" \
|
|
CXXFLAGS="$SLKCFLAGS" \
|
|
./configure \
|
|
--prefix=/usr \
|
|
--libdir='${exec_prefix}'/lib${LIBDIRSUFFIX} \
|
|
--sysconfdir=/etc \
|
|
--localstatedir=/var \
|
|
--mandir=/usr/man \
|
|
--docdir=/usr/doc/$PRGNAM-$VERSION \
|
|
--with-mt \
|
|
--with-dll \
|
|
--without-debug \
|
|
--without-downloaded-vdb \
|
|
--without-bdb \
|
|
--build=$ARCH-slackware-linux
|
|
|
|
# It does not seem to matter whether to use 'make all' and 'make install-toolkit',
|
|
# but let's have them here as a future reminder that these options exist.
|
|
#make all
|
|
#make prefix=$PKG/usr install-toolkit
|
|
|
|
make
|
|
make prefix=$PKG/usr install
|
|
|
|
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
|
|
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
|
|
|
|
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
|
|
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
|
|
|
|
mkdir -p $PKG/install
|
|
cat $CWD/slack-desc > $PKG/install/slack-desc
|
|
|
|
cd $PKG
|
|
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
|