Andrei Rabusov 377da07501 academic/root: Updated for version 6.32.04 (+fix 32 bit) ... Added a patch from the 6.34 fixes branch to fix the issue #15738. It shall be removed later when we switch to the 6.34 branch. remove ld.so.conf and PATH manipulations Wrapper scripts are created in /usr/bin for all ROOT binaries. The trick does not work for python though, one needs to run LD_LIBRARY_PATH=${ROOTSYS}/lib python3 in order to import ROOT modules correctly. Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2024-08-23 21:37:39 +07:00
..
3D-ICE
abntex
acl2
aenig4
aeskulap
aline
aliview
AlphaPlot
amd
amplicon
amplifx
antiprism
archaeopteryx
aris
arka
armadillo
arpack
arpack-ng	academic/arpack-ng: Updated for version 3.9.1	2024-01-13 07:14:25 +07:00
artha
AstroImageJ	academic/AstroImageJ: Update to 5.3.2.00	2024-01-22 09:40:26 +07:00
avl
avogadroapp	academic/avogadroapp: Update README.	2023-11-06 06:10:13 +07:00
avogadrolibs	academic/avogadrolibs: Update README.	2023-11-06 06:09:03 +07:00
bcftools	academic/bcftools	2024-05-04 21:45:02 +07:00
bedGraphToBigWig
bedtools
biblesync
bibletime
bibus
biopython
boinc	academic/boinc: Updated for version 7.24.1	2024-01-20 09:16:23 +07:00
bowtie
bowtie2	academic/bowtie2: Upgrade to version 2.5.4	2024-07-28 07:26:37 +07:00
bowtie2-legacy
bpp-core
bpp-phyl
bpp-phyl-omics
bpp-popgen
bpp-seq
bpp-seq-omics
bpp1.9-numcalc
bpp1.9-phyl
bpp1.9-seq
bpp1.9-utils
bppsuite	academic/bppsuite: Fix redundant deps.	2023-12-22 07:59:38 +07:00
btf
bwa
cadabra2	academic/cadabra2: Update script.	2024-06-28 19:01:24 +07:00
CAFS_divergence
calc
calcoo
camd
cap3
CAPS_coevolution
cblas	academic/cblas: Updated for version 3.12.0	2024-01-13 07:14:25 +07:00
ccolamd
cdo	academic/cdo: Updated for version 2.4.2.	2024-07-23 23:38:39 +07:00
celestia
chartgeany
chemtool
cholmod	academic/cholmod: Fix redundant deps.	2023-12-22 07:59:38 +07:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS
cistrome-mdseqpos
clark-ugene
cld2
clustalo
clustalw
clustalx
colamd
colin
convertall
copasi	academic/copasi: Updated for version 4.44.295.	2024-07-09 21:11:10 +07:00
cryptominisat	academic/cryptominisat: Fix build.	2024-03-24 17:43:58 +07:00
csparse
cufflinks
cutadapt
cvc4	academic/cvc4: Update dependencies.	2023-12-02 07:54:23 +07:00
cxsparse
dakota	academic/dakota: Fix redundant deps.	2023-12-22 07:59:38 +07:00
Data2FCS
datamash
DendroPy
diamond
dimod
DRAMPower
DRAMSim2
DRAMsim3
DRAMSys
ds9
dwave-cloud-client
dwave-greedy
dwave-hybrid
dwave-inspector
dwave-neal	academic/dwave-neal: Fix redundant deps.	2023-12-22 07:59:38 +07:00
dwave-networkx
dwave-ocean-sdk
dwave-preprocessing
dwave-system
dwave-tabu
dwavebinarycsp
easy_spice
ed-v6
edsim51di
elk
EMBASSY
EMBOSS
engauge	academic/engauge: Fix build.	2024-05-21 10:53:26 +07:00
ent	academic/ent: Use https URLs.	2024-03-23 08:17:07 +07:00
ephem
eprover
equalx
ess
evopedia_qt
exonerate
extrema
fann
fastqc
FastTree
FCSalyzer
fet	academic/fet: Updated for version 6.24.0.	2024-08-22 23:52:06 +07:00
FigTree
fiji
finchtv
fityk	academic/fityk: Fix redundant deps.	2023-12-22 07:59:39 +07:00
flann
flexbar	academic/flexbar: incl. patches for newer tbb	2023-11-08 00:02:01 +07:00
free42
FreeFem	academic/FreeFem: Updated for version 4.14.	2023-12-13 01:48:21 +07:00
g3data
Gabedit
gaiasky	academic/gaiasky: Updated for version 3.6.2.	2024-06-07 12:00:42 +07:00
galculator
gaw3
Gblocks
gchemutils
gcompris-qt	academic/gcompris-qt: Updated for version 4.1.	2024-05-22 22:29:49 +07:00
gdstk	academic/gdstk: Added (GDSII / OASIS file library).	2023-12-09 07:50:06 +07:00
geda-gaf
gelemental
gem5
geneconv
genius
genometools
genpak
GeoGebra
geomview
gephi	academic/gephi: Fix .info.	2024-08-08 13:26:09 +07:00
gerbv	academic/gerbv: Updated for version 2.10.0.	2024-01-08 10:06:20 +07:00
getdp
getfem
ggobi
ghemical
glpk
glvis
gmsh	academic/gmsh: Updated for version 4.13.1.	2024-06-18 10:14:30 +07:00
gnucap
gp2fasta
gplates	academic/gplates: Added (plate tectonics program).	2024-02-10 16:17:21 +07:00
gpredict	academic/gpredict: Added aarch64 flags	2024-01-19 09:51:03 +07:00
grace
gresistor
gretl
gri	academic/gri: Updated for version 2.12.7	2024-05-11 06:51:48 +07:00
Gridcoin-Research	academic/Gridcoin-Research: Updated for version 5.4.8.0	2024-05-04 21:45:29 +07:00
gromacs
grpn
gspiceui
gtkwave
gtypist
gwyddion	academic/gwyddion: Updated for version 2.66.	2024-06-01 12:12:00 +07:00
h5utils
harminv
hdfview	academic/hdfview: Added (visualization and exploration software).	2023-11-19 21:08:04 +07:00
HMMER
hyphy
IGV
io_lib
iqtree
irsim
Isabelle
isoelectric-point
iTest
itex2mml
ITK	academic/ITK: Fix build.	2024-03-12 23:46:52 +07:00
jalview
jellyfish_k-mer
jpicedt
kalign
karma
kissat	academic/kissat: Added (SAT solver).	2024-04-14 12:05:18 +07:00
klavaro
klu	academic/klu: Fix redundant deps.	2023-12-22 07:59:39 +07:00
knime
kraken
Kst
ktikz
kurso
labplot2	academic/labplot2: Updated for version 2.11.1.	2024-08-20 10:46:00 +07:00
ladr
laghos
lalnview
lammps	academic/lammps: Remove doinst.sh.	2024-04-17 14:55:21 +07:00
lapack95
lapacke	academic/lapacke: Updated for version 3.12.0	2024-01-13 07:14:25 +07:00
latex2html
ldl
libghemical
locarna
louvain-community	academic/louvain-community: Fix github URL.	2024-04-05 15:18:04 +07:00
lpsolve
mafft
magic	academic/magic: Updated for version 8.3.474.	2024-05-11 06:51:54 +07:00
mathics
mathjax2
mathomatic
matio
maxima
meep	academic/meep: Fix redundant deps.	2023-12-22 07:59:39 +07:00
megax
meme-db-gomo
meme-db-motif
meme-db-tgene
meme-suite
mendeleydesktop
metalwalls
MetaPhlAn2	academic/MetaPhlAn2: Fix github URL.	2024-04-05 15:18:04 +07:00
metis
mfem
minorminer
mkDSSP
molden	academic/molden: Added (Molecular Density Viewer).	2024-06-04 19:59:35 +07:00
molequeue
mpb
mrbayes
mumsa
muscle
muscle5
ncbi-blast
ncbi-blast+
ncbi-edirect
ncbi-rmblastn
nco	academic/nco: Updated for version 5.2.7.	2024-07-26 06:21:32 +07:00
ncview
ngspice	academic/ngspice: Updated for version 43.	2024-07-17 22:39:07 +07:00
novocraft
NWChem
octave	academic/octave: Updated for version 9.2.0	2024-07-13 07:47:27 +07:00
openboard	academic/openboard: Replaced backtick cmdsub.	2024-07-20 08:09:03 +07:00
OpenFOAM	academic/OpenFOAM: Updated for version 11.	2023-12-22 08:47:16 +07:00
OpenMM
OpenVSP	academic/OpenVSP: Fix build.	2024-06-25 06:10:28 +07:00
pal2nal
paml
pamlX
papi
pari
parmetis
patsy
pcalc
pcb
penaltymodel
perlprimer
PhyML
pianobooster
plasmidomics
plus42	academic/plus42: Updated for version 1.1.12.	2024-06-01 00:33:25 +07:00
pomoxis
prank-msa
primer3
pspp	academic/pspp: Updated for version 2.0.1.	2024-05-04 21:45:16 +07:00
pulseview
PyAMG	academic/PyAMG: Fix redundant deps.	2023-12-22 07:59:38 +07:00
pyCRAC	academic/pyCRAC: Mark for x86_64.	2024-07-28 07:55:13 +07:00
pysam	academic/pysam: Upgrade to version 0.22.1	2024-07-28 07:34:07 +07:00
python2-kiwisolver
python2-scipy
python3-ase	academic/python3-ase: Fix redundant deps.	2023-12-22 07:59:39 +07:00
python3-scipy	academic/python3-scipy: Fix PYTHONPATH.	2024-04-05 15:18:20 +07:00
qalculate-gtk
qcl
qhull	academic/qhull: Remove outdated octave symlinks.	2024-01-16 14:36:14 +07:00
qrupdate	academic/qrupdate: Fix redundant deps.	2023-12-22 07:59:40 +07:00
qucs	academic/qucs: Updated for version 0.0.20.	2024-06-29 21:19:10 +07:00
qucs-s	academic/qucs-s: Updated for version 24.3.0.	2024-07-26 12:02:58 +07:00
qucsator	academic/qucsator: Added (Circuit Simulator).	2024-06-29 21:20:04 +07:00
R	academic/R: Updated for version 4.4.0.	2024-05-04 21:45:24 +07:00
ramulator
RAxML
rbio
reduce-algebra
RepeatMasker
root	academic/root: Updated for version 6.32.04 (+fix 32 bit)	2024-08-23 21:37:39 +07:00
rpy2	academic/rpy2: Upgrade to version 3.5.16	2024-04-15 10:00:33 +07:00
sage
sage-bin
samtools	academic/samtools:Upgrade to 1.20	2024-05-04 21:45:02 +07:00
samtools-legacy
scidavis	academic/scidavis: Fix building on -current.	2024-04-13 22:04:05 +07:00
scilab
scmutils	academic/scmutils: Added (scm utils).	2023-11-29 18:35:27 +07:00
seaview
seqkit
SeqMonk
sequence-analysis
Shark
sigrok-cli
sim
SimEng
siril
smath-studio	academic/smath-studio: Updated for version 1.1.8763	2024-05-04 21:45:29 +07:00
snpEff
solfege	academic/solfege: New maintainer.	2024-08-17 18:14:15 +07:00
spades
speedcrunch
spiceopus
spidey
spqr	academic/spqr: Fix redundant deps.	2023-12-22 07:59:40 +07:00
squizz
staden
STAR	academic/STAR:Upgrade to version 2.7.11b	2024-01-30 07:48:15 +07:00
stellarium	academic/stellarium: Updated for version 23.4.	2024-01-09 08:45:39 +07:00
stellarsolver	academic/stellarsolver: Mark for x86_64 only.	2024-05-04 21:45:22 +07:00
stringtie
SU2
suitesparse	academic/suitesparse: Ensure correct linking	2023-11-25 22:12:39 +07:00
suitesparseconfig
sundials
sword
sword-data-kjv	academic/sword-data-kjv: Replaced backtick cmdsub.	2024-07-20 08:09:03 +07:00
t_coffee
tabix-legacy
tiemu
tilem
tilem2
tkgate
topdraw
tophat
treebest-ensembl
TreeGraph
treerecs
treeviewx
trfind
trimmomatic
tuxmath
tuxtype2
ucsc-blat
ugene
umfpack	academic/umfpack: Fix redundant deps.	2023-12-22 07:59:40 +07:00
units	academic/units: Updated for version 2.23.	2024-02-24 15:34:49 +07:00
vCAPS_coevolution
vcftools
velocyto
verilator
verilog
veusz
ViennaRNA	academic/ViennaRNA: patch to compile against swig_4.2	2024-07-28 07:47:01 +07:00
voro++
wcalc	academic/wcalc: Use correct sourceforge link.	2024-01-27 15:37:51 +07:00
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel
WEVOTE
wise
wmcalc
WolframEngine	academic/WolframEngine: Updated for version 14.0.0.	2024-04-13 22:03:51 +07:00
WordNet
wxMaxima
x48	academic/x48: Fixed MD5SUM.	2024-04-14 08:34:30 +07:00
xcircuit
xephem
xflr5	academic/xflr5: gzip patches.	2023-12-29 18:49:32 +07:00
xfoil
xiphos	academic/xiphos: fix script typo	2024-07-30 01:12:41 +07:00
xoscope
xschem	academic/xschem: Update script.	2023-12-06 10:09:31 +07:00
xsimd	academic/xsimd: Updated for version 13.0.0.	2024-05-25 11:47:40 +07:00
yices2
z3
ZeGrapher
zotero	academic/zotero: update 7.0.1	2024-08-17 12:09:05 +07:00
zotero-gtk2