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18 lines
834 B
Text
18 lines
834 B
Text
PAML: Phylogenetic Analysis by Maximum Likelihood
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PAML is a package of programs for phylogenetic analyses of DNA or
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protein sequences using maximum likelihood. PAML is not good for tree
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making. It may be used to estimate parameters and test hypotheses to
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study the evolutionary process, when you have reconstructed trees
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using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.
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Notes about running of PAML programs and the package:
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- Example datasets are included in /usr/share/paml/examples
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- Control files for PAML programs are in /usr/share/paml
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- Dcumentation can be found in /usr/doc/paml-$VERSION
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- Additional executables are placed in /usr/libexec/paml
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Suggested citation:
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Yang, Z. 2007. PAML 4: a program package for phylogenetic analysis by
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maximum likelihood. Molecular Biology and Evolution 24: 1586-1591
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