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14 lines
752 B
Text
14 lines
752 B
Text
These papers describe FastTree: the first paper describes FastTree 1.0,
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and the second paper describes heuristic minimum-evolution SPR moves,
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maximum-likelihood NNIs, and SH-like local supports. We have also
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eliminated the O(N2) steps in the neighbor-joining phase, and
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implemented maximum-likelihood NNI moves and SH-like supports (see the
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ChangeLog).
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Price, M.N., Dehal, P.S., and Arkin, A.P. (2009) FastTree: Computing
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Large Minimum-Evolution Trees with Profiles instead of a Distance Matrix.
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Molecular Biology and Evolution 26:1641-1650, doi:10.1093/molbev/msp077.
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Price, M.N., Dehal, P.S., and Arkin, A.P. (2010) FastTree 2 --
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Approximately Maximum-Likelihood Trees for Large Alignments. PLoS ONE,
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5(3):e9490. doi:10.1371/journal.pone.0009490.
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