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SPAdes: a single-cell genome assembler SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies. SPAdes generates single-cell assemblies, providing information about genomes of uncultivatable bacteria that vastly exceeds what may be obtained via traditional metagenomics studies. Citing: Nurk S et al. Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. Journal of Computational Biology 20(10) (2013), 714-737. doi:10.1089/cmb.2013.0084 NOTE: This will not build on a 32bit system.