mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-26 22:06:35 +01:00
e04b7b18ba
Signed-off-by: Kyle Guinn <elyk03@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
1140 lines
40 KiB
Diff
1140 lines
40 KiB
Diff
diff --git a/Demo/Makefile.am b/Demo/Makefile.am
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new file mode 100644
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--- /dev/null
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+++ b/Demo/Makefile.am
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@@ -0,0 +1,115 @@
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+AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
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+
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+EXTRA_DIST = \
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+ README.txt \
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+ qrdemo_out.txt \
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+ qrdemoc_out.txt
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+
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+check_PROGRAMS = \
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+ qrsimple \
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+ qrsimplec \
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+ qrdemo \
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+ qrdemoc
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+
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+qrsimple_SOURCES = qrsimple.cpp
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+qrsimple_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS)
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+
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+qrsimplec_SOURCES = qrsimplec.c
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+qrsimplec_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS)
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+
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+qrdemo_SOURCES = qrdemo.cpp
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+qrdemo_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS)
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+
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+qrdemoc_SOURCES = qrdemoc.c
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+qrdemoc_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS)
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+
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+MATRICES = \
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+ $(top_srcdir)/Matrix/GD01_b.mtx \
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+ $(top_srcdir)/Matrix/GD06_theory.mtx \
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+ $(top_srcdir)/Matrix/GD98_a.mtx \
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+ $(top_srcdir)/Matrix/LFAT5.mtx \
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+ $(top_srcdir)/Matrix/Ragusa16.mtx \
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+ $(top_srcdir)/Matrix/Tina_AskCal.mtx \
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+ $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx \
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+ $(top_srcdir)/Matrix/a0.mtx \
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+ $(top_srcdir)/Matrix/a04.mtx \
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+ $(top_srcdir)/Matrix/a1.mtx \
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+ $(top_srcdir)/Matrix/a2.mtx \
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+ $(top_srcdir)/Matrix/a4.mtx \
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+ $(top_srcdir)/Matrix/ash219.mtx \
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+ $(top_srcdir)/Matrix/b1_ss.mtx \
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+ $(top_srcdir)/Matrix/bcspwr01.mtx \
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+ $(top_srcdir)/Matrix/bfwa62.mtx \
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+ $(top_srcdir)/Matrix/c2.mtx \
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+ $(top_srcdir)/Matrix/c32.mtx \
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+ $(top_srcdir)/Matrix/lfat5b.mtx \
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+ $(top_srcdir)/Matrix/lp_share1b.mtx \
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+ $(top_srcdir)/Matrix/lpi_galenet.mtx \
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+ $(top_srcdir)/Matrix/lpi_itest6.mtx \
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+ $(top_srcdir)/Matrix/r2.mtx \
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+ $(top_srcdir)/Matrix/s32.mtx \
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+ $(top_srcdir)/Matrix/west0067.mtx \
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+ $(top_srcdir)/Matrix/young1c.mtx \
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+ $(top_srcdir)/Matrix/lp_e226_transposed.mtx
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+
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+check-local: $(check_PROGRAMS) $(MATRICES)
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+ -./qrsimple < $(top_srcdir)/Matrix/ash219.mtx
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+ -./qrsimplec < $(top_srcdir)/Matrix/ash219.mtx
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+ -./qrsimple < $(top_srcdir)/Matrix/west0067.mtx
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+ -./qrsimplec < $(top_srcdir)/Matrix/west0067.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/a2.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/r2.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/a04.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/a2.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/west0067.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/c2.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/a0.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/lfat5b.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/bfwa62.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/LFAT5.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/b1_ss.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/bcspwr01.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/lpi_galenet.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/lpi_itest6.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/ash219.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/a4.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/s32.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/c32.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/lp_share1b.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/a1.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/GD06_theory.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/GD01_b.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/GD98_a.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/Ragusa16.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/young1c.mtx
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+ -./qrdemo < $(top_srcdir)/Matrix/lp_e226_transposed.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/r2.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/a04.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/west0067.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/c2.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/a0.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/lfat5b.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/bfwa62.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/LFAT5.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/b1_ss.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/bcspwr01.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/lpi_galenet.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/lpi_itest6.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/ash219.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/a4.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/s32.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/c32.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/lp_share1b.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/a1.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/GD06_theory.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/GD01_b.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/GD98_a.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/Ragusa16.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/young1c.mtx
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+ -./qrdemoc < $(top_srcdir)/Matrix/lp_e226_transposed.mtx
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diff --git a/Doc/Makefile.am b/Doc/Makefile.am
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new file mode 100644
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--- /dev/null
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+++ b/Doc/Makefile.am
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@@ -0,0 +1,29 @@
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+EXTRA_DIST = \
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+ ChangeLog \
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+ License.txt \
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+ README.txt \
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+ gpl.txt
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+
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+dist_noinst_DATA = \
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+ spqr_user_guide.tex \
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+ spqr_user_guide.bib
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+
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+dist_pdf_DATA = \
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+ spqr_user_guide.pdf \
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+ algo_spqr.pdf \
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+ spqr.pdf
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+
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+TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error
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+BIB = BIBINPUTS="$(srcdir):" bibtex
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+%.pdf: %.tex %.bbl
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+ $(TEX) $*
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+ while grep -q "Rerun to get cross-references right" $*.log; do \
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+ $(TEX) $*; \
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+ done
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+%.bbl: %.aux %.bib
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+ $(BIB) $*
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+%.aux: %.tex
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+ $(TEX) $*
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+
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+CLEANFILES = *.aux *.bbl *.blg *.log *.toc
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+MAINTAINERCLEANFILES = $(dist_pdf_DATA)
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diff --git a/Include/Makefile.am b/Include/Makefile.am
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new file mode 100644
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--- /dev/null
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+++ b/Include/Makefile.am
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@@ -0,0 +1,5 @@
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+pkginclude_HEADERS = \
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+ SuiteSparseQR.hpp \
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+ SuiteSparseQR_C.h \
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+ SuiteSparseQR_definitions.h \
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+ spqr.hpp
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diff --git a/Makefile.am b/Makefile.am
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new file mode 100644
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--- /dev/null
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+++ b/Makefile.am
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@@ -0,0 +1,9 @@
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+ACLOCAL_AMFLAGS = -I m4
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+
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+SUBDIRS = Include Source Matrix Demo Tcov Doc
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+EXTRA_DIST = README.txt
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+
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+pkgconfig_DATA = spqr.pc
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+
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+CODE_COVERAGE_BRANCH_COVERAGE = 1
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+@CODE_COVERAGE_RULES@
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diff --git a/Matrix/Makefile.am b/Matrix/Makefile.am
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new file mode 100644
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--- /dev/null
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+++ b/Matrix/Makefile.am
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@@ -0,0 +1,36 @@
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+EXTRA_DIST = \
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+ README.txt
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+
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+dist_noinst_DATA = \
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+ GD01_b.mtx \
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+ GD06_theory.mtx \
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+ GD98_a.mtx \
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+ LFAT5.mtx \
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+ Ragusa16.mtx \
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+ Tina_AskCal.mtx \
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+ Tina_AskCal_perm.mtx \
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+ a0.mtx \
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+ a04.mtx \
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+ a1.mtx \
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+ a2.mtx \
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+ a4.mtx \
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+ arrow.mtx \
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+ ash219.mtx \
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+ b1_ss.mtx \
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+ bcspwr01.mtx \
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+ bfwa62.mtx \
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+ c2.mtx \
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+ c32.mtx \
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+ lfat5b.mtx \
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+ lp_share1b.mtx \
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+ lpi_galenet.mtx \
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+ lpi_itest6.mtx \
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+ pwr01b.mtx \
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+ r2.mtx \
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+ s32.mtx \
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+ west0067.mtx \
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+ young1c.mtx \
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+ Franz6_id1959_aug.mtx \
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+ Groebner_id2003_aug.mtx \
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+ lp_e226.mtx \
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+ lp_e226_transposed.mtx
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diff --git a/Source/Makefile.am b/Source/Makefile.am
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new file mode 100644
|
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--- /dev/null
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+++ b/Source/Makefile.am
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|
@@ -0,0 +1,56 @@
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+AM_CPPFLAGS = -I$(top_srcdir)/Include $(TBB_CFLAGS) $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
|
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+if !EXPERT
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+AM_CPPFLAGS += -DNEXPERT
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+endif
|
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+if TBB
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+AM_CPPFLAGS += -DHAVE_TBB
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+endif
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+
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+lib_LTLIBRARIES = libspqr.la
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+
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+libspqr_la_SOURCES = \
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+ SuiteSparseQR.cpp \
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+ SuiteSparseQR_C.cpp \
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+ SuiteSparseQR_expert.cpp \
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+ SuiteSparseQR_qmult.cpp \
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+ spqr_1colamd.cpp \
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+ spqr_1factor.cpp \
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+ spqr_1fixed.cpp \
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+ spqr_analyze.cpp \
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+ spqr_append.cpp \
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+ spqr_assemble.cpp \
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+ spqr_cpack.cpp \
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+ spqr_csize.cpp \
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+ spqr_cumsum.cpp \
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+ spqr_debug.cpp \
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+ spqr_factorize.cpp \
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+ spqr_fcsize.cpp \
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+ spqr_freefac.cpp \
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+ spqr_freenum.cpp \
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+ spqr_freesym.cpp \
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+ spqr_front.cpp \
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+ spqr_fsize.cpp \
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+ spqr_happly.cpp \
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+ spqr_happly_work.cpp \
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+ spqr_hpinv.cpp \
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+ spqr_kernel.cpp \
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+ spqr_larftb.cpp \
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+ spqr_maxcolnorm.cpp \
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+ spqr_panel.cpp \
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+ spqr_parallel.cpp \
|
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+ spqr_rconvert.cpp \
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+ spqr_rcount.cpp \
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+ spqr_rhpack.cpp \
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+ spqr_rmap.cpp \
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+ spqr_rsolve.cpp \
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+ spqr_shift.cpp \
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+ spqr_stranspose1.cpp \
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+ spqr_stranspose2.cpp \
|
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+ spqr_tol.cpp \
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+ spqr_trapezoidal.cpp \
|
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+ spqr_type.cpp
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+
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+libspqr_la_LIBADD = $(TBB_LIBS) $(CHOLMOD_LIBS) $(SUITESPARSECONFIG_LIBS) $(LAPACK_LIBS) $(BLAS_LIBS) -lm $(CODE_COVERAGE_LIBS)
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+libspqr_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS)
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+libspqr_la_CXXFLAGS = $(AM_CXXFLAGS) $(CODE_COVERAGE_CXXFLAGS)
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+libspqr_la_LDFLAGS = -no-undefined -release $(PACKAGE_VERSION)
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diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am
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new file mode 100644
|
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--- /dev/null
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+++ b/Tcov/Makefile.am
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@@ -0,0 +1,52 @@
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+AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
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|
+
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+EXTRA_DIST = \
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+ README.txt
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|
+
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+dist_noinst_DATA = \
|
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+ matrix1.txt \
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+ matrixlist.txt
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+
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+if CODE_COVERAGE_ENABLED
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+check_PROGRAMS = \
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+ qrtest
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+
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+qrtest_SOURCES = qrtestc.c qrtest.cpp
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+qrtest_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) $(SUITESPARSECONFIG_LIBS)
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|
+
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+MATRICES = \
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+ $(srcdir)/matrix1.txt \
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|
+ $(srcdir)/matrixlist.txt \
|
|
+ $(top_srcdir)/Matrix/GD01_b.mtx \
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|
+ $(top_srcdir)/Matrix/GD06_theory.mtx \
|
|
+ $(top_srcdir)/Matrix/GD98_a.mtx \
|
|
+ $(top_srcdir)/Matrix/LFAT5.mtx \
|
|
+ $(top_srcdir)/Matrix/Ragusa16.mtx \
|
|
+ $(top_srcdir)/Matrix/Tina_AskCal.mtx \
|
|
+ $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx \
|
|
+ $(top_srcdir)/Matrix/a0.mtx \
|
|
+ $(top_srcdir)/Matrix/a04.mtx \
|
|
+ $(top_srcdir)/Matrix/a1.mtx \
|
|
+ $(top_srcdir)/Matrix/a2.mtx \
|
|
+ $(top_srcdir)/Matrix/a4.mtx \
|
|
+ $(top_srcdir)/Matrix/arrow.mtx \
|
|
+ $(top_srcdir)/Matrix/ash219.mtx \
|
|
+ $(top_srcdir)/Matrix/b1_ss.mtx \
|
|
+ $(top_srcdir)/Matrix/bcspwr01.mtx \
|
|
+ $(top_srcdir)/Matrix/bfwa62.mtx \
|
|
+ $(top_srcdir)/Matrix/c2.mtx \
|
|
+ $(top_srcdir)/Matrix/c32.mtx \
|
|
+ $(top_srcdir)/Matrix/lfat5b.mtx \
|
|
+ $(top_srcdir)/Matrix/lp_share1b.mtx \
|
|
+ $(top_srcdir)/Matrix/lpi_galenet.mtx \
|
|
+ $(top_srcdir)/Matrix/lpi_itest6.mtx \
|
|
+ $(top_srcdir)/Matrix/r2.mtx \
|
|
+ $(top_srcdir)/Matrix/s32.mtx \
|
|
+ $(top_srcdir)/Matrix/west0067.mtx
|
|
+
|
|
+check-local: $(check_PROGRAMS) $(MATRICES)
|
|
+ ./qrtest $(srcdir)/matrixlist.txt > qrtest_out.txt
|
|
+ ./qrtest $(srcdir)/matrix1.txt > qrtest_out1.txt
|
|
+endif
|
|
+
|
|
+CLEANFILES = qrtest_out.txt qrtest_out1.txt
|
|
diff --git a/configure.ac b/configure.ac
|
|
new file mode 100644
|
|
--- /dev/null
|
|
+++ b/configure.ac
|
|
@@ -0,0 +1,119 @@
|
|
+# -*- Autoconf -*-
|
|
+# Process this file with autoconf to produce a configure script.
|
|
+
|
|
+AC_PREREQ([2.69])
|
|
+AC_INIT([SPQR],[2.0.9],[https://github.com/DrTimothyAldenDavis/SuiteSparse],[spqr],[http://www.suitesparse.com/])
|
|
+AC_CONFIG_SRCDIR([Source/spqr_kernel.cpp])
|
|
+AC_CONFIG_AUX_DIR([build-aux])
|
|
+AC_CONFIG_MACRO_DIR([m4])
|
|
+AC_CONFIG_HEADERS([config.h])
|
|
+AM_INIT_AUTOMAKE([foreign])
|
|
+AM_SILENT_RULES([yes])
|
|
+LT_INIT([disable-static])
|
|
+
|
|
+# Checks for programs.
|
|
+PKG_PROG_PKG_CONFIG
|
|
+AC_PROG_INSTALL
|
|
+AC_PROG_F77
|
|
+AC_PROG_CC
|
|
+AC_PROG_CXX
|
|
+AC_LANG([C++])
|
|
+AX_CODE_COVERAGE
|
|
+
|
|
+AC_ARG_ENABLE([expert],
|
|
+ [AS_HELP_STRING(
|
|
+ [--disable-expert],
|
|
+ [compile without the min 2-norm solution option])],
|
|
+ [],
|
|
+ [AS_VAR_SET([enable_expert], [yes])])
|
|
+
|
|
+AC_ARG_WITH([tbb],
|
|
+ [AS_HELP_STRING(
|
|
+ [--without-tbb],
|
|
+ [do not use Intel Threading Building Blocks for multithreading])],
|
|
+ [],
|
|
+ [AS_VAR_SET([with_tbb], [yes])])
|
|
+
|
|
+AS_VAR_SET([LIBS_SAVED], [$LIBS])
|
|
+
|
|
+# Checks for libraries.
|
|
+AC_CHECK_LIB([m], [sqrt])
|
|
+
|
|
+AX_BLAS(
|
|
+ [],
|
|
+ [AC_MSG_ERROR([cannot find BLAS])])
|
|
+
|
|
+AX_LAPACK(
|
|
+ [],
|
|
+ [AC_MSG_ERROR([cannot find LAPACK])])
|
|
+
|
|
+PKG_CHECK_MODULES([SUITESPARSECONFIG], [suitesparseconfig])
|
|
+PKG_CHECK_MODULES([CHOLMOD], [cholmod])
|
|
+
|
|
+# Checks for header files.
|
|
+AC_CHECK_HEADERS([float.h stdlib.h])
|
|
+
|
|
+AS_IF([test "x$with_tbb" = "xyes"], [
|
|
+ AC_CHECK_HEADERS([tbb/task_scheduler_init.h tbb/task.h])
|
|
+])
|
|
+
|
|
+# Checks for typedefs, structures, and compiler characteristics.
|
|
+AC_TYPE_SIZE_T
|
|
+
|
|
+# Checks for library functions.
|
|
+AC_CHECK_FUNCS([sqrt])
|
|
+
|
|
+AS_VAR_SET([LIBS], [$LIBS_SAVED])
|
|
+
|
|
+AS_IF([test "x$with_tbb" = "xyes"], [
|
|
+ AC_SUBST([TBB_CFLAGS], [""])
|
|
+ AC_SUBST([TBB_LIBS], ["-ltbb"])
|
|
+])
|
|
+
|
|
+AC_MSG_CHECKING([whether to use expert routines])
|
|
+AC_MSG_RESULT([$enable_expert])
|
|
+AM_CONDITIONAL([EXPERT], [test "x$enable_expert" = "xyes"])
|
|
+
|
|
+AC_MSG_CHECKING([whether to use Intel Threading Building Blocks])
|
|
+AC_MSG_RESULT([$with_tbb])
|
|
+AM_CONDITIONAL([TBB], [test "x$with_tbb" = "xyes"])
|
|
+
|
|
+m4_ifdef([PKG_INSTALLDIR], [PKG_INSTALLDIR], [AC_SUBST([pkgconfigdir], [${libdir}/pkgconfig])])
|
|
+AC_CONFIG_FILES([
|
|
+ spqr.pc
|
|
+ Makefile
|
|
+ Demo/Makefile
|
|
+ Doc/Makefile
|
|
+ Include/Makefile
|
|
+ Matrix/Makefile
|
|
+ Source/Makefile
|
|
+ Tcov/Makefile
|
|
+])
|
|
+#AC_CONFIG_LINKS([Matrix:Matrix]) # Can't link an entire directory?
|
|
+AC_CONFIG_LINKS([Matrix/GD01_b.mtx:Matrix/GD01_b.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/GD06_theory.mtx:Matrix/GD06_theory.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/GD98_a.mtx:Matrix/GD98_a.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/LFAT5.mtx:Matrix/LFAT5.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/Ragusa16.mtx:Matrix/Ragusa16.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/Tina_AskCal.mtx:Matrix/Tina_AskCal.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/Tina_AskCal_perm.mtx:Matrix/Tina_AskCal_perm.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/a0.mtx:Matrix/a0.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/a04.mtx:Matrix/a04.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/a1.mtx:Matrix/a1.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/a2.mtx:Matrix/a2.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/a4.mtx:Matrix/a4.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/arrow.mtx:Matrix/arrow.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/ash219.mtx:Matrix/ash219.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/b1_ss.mtx:Matrix/b1_ss.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/bcspwr01.mtx:Matrix/bcspwr01.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/bfwa62.mtx:Matrix/bfwa62.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/c2.mtx:Matrix/c2.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/c32.mtx:Matrix/c32.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/lfat5b.mtx:Matrix/lfat5b.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/lp_share1b.mtx:Matrix/lp_share1b.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/lpi_galenet.mtx:Matrix/lpi_galenet.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/lpi_itest6.mtx:Matrix/lpi_itest6.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/r2.mtx:Matrix/r2.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/s32.mtx:Matrix/s32.mtx])
|
|
+AC_CONFIG_LINKS([Matrix/west0067.mtx:Matrix/west0067.mtx])
|
|
+AC_OUTPUT
|
|
diff --git a/m4/ax_blas.m4 b/m4/ax_blas.m4
|
|
new file mode 100644
|
|
--- /dev/null
|
|
+++ b/m4/ax_blas.m4
|
|
@@ -0,0 +1,241 @@
|
|
+# ===========================================================================
|
|
+# https://www.gnu.org/software/autoconf-archive/ax_blas.html
|
|
+# ===========================================================================
|
|
+#
|
|
+# SYNOPSIS
|
|
+#
|
|
+# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
|
|
+#
|
|
+# DESCRIPTION
|
|
+#
|
|
+# This macro looks for a library that implements the BLAS linear-algebra
|
|
+# interface (see http://www.netlib.org/blas/). On success, it sets the
|
|
+# BLAS_LIBS output variable to hold the requisite library linkages.
|
|
+#
|
|
+# To link with BLAS, you should link with:
|
|
+#
|
|
+# $BLAS_LIBS $LIBS $FLIBS
|
|
+#
|
|
+# in that order. FLIBS is the output variable of the
|
|
+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
|
|
+# sometimes necessary in order to link with F77 libraries. Users will also
|
|
+# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
|
|
+# reason.
|
|
+#
|
|
+# Many libraries are searched for, from ATLAS to CXML to ESSL. The user
|
|
+# may also use --with-blas=<lib> in order to use some specific BLAS
|
|
+# library <lib>. In order to link successfully, however, be aware that you
|
|
+# will probably need to use the same Fortran compiler (which can be set
|
|
+# via the F77 env. var.) as was used to compile the BLAS library.
|
|
+#
|
|
+# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is
|
|
+# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is
|
|
+# not found. If ACTION-IF-FOUND is not specified, the default action will
|
|
+# define HAVE_BLAS.
|
|
+#
|
|
+# LICENSE
|
|
+#
|
|
+# Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
|
|
+# Copyright (c) 2019 Geoffrey M. Oxberry <goxberry@gmail.com>
|
|
+#
|
|
+# This program is free software: you can redistribute it and/or modify it
|
|
+# under the terms of the GNU General Public License as published by the
|
|
+# Free Software Foundation, either version 3 of the License, or (at your
|
|
+# option) any later version.
|
|
+#
|
|
+# This program is distributed in the hope that it will be useful, but
|
|
+# WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
|
|
+# Public License for more details.
|
|
+#
|
|
+# You should have received a copy of the GNU General Public License along
|
|
+# with this program. If not, see <https://www.gnu.org/licenses/>.
|
|
+#
|
|
+# As a special exception, the respective Autoconf Macro's copyright owner
|
|
+# gives unlimited permission to copy, distribute and modify the configure
|
|
+# scripts that are the output of Autoconf when processing the Macro. You
|
|
+# need not follow the terms of the GNU General Public License when using
|
|
+# or distributing such scripts, even though portions of the text of the
|
|
+# Macro appear in them. The GNU General Public License (GPL) does govern
|
|
+# all other use of the material that constitutes the Autoconf Macro.
|
|
+#
|
|
+# This special exception to the GPL applies to versions of the Autoconf
|
|
+# Macro released by the Autoconf Archive. When you make and distribute a
|
|
+# modified version of the Autoconf Macro, you may extend this special
|
|
+# exception to the GPL to apply to your modified version as well.
|
|
+
|
|
+#serial 17
|
|
+
|
|
+AU_ALIAS([ACX_BLAS], [AX_BLAS])
|
|
+AC_DEFUN([AX_BLAS], [
|
|
+AC_PREREQ([2.55])
|
|
+AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
|
|
+AC_REQUIRE([AC_CANONICAL_HOST])
|
|
+ax_blas_ok=no
|
|
+
|
|
+AC_ARG_WITH(blas,
|
|
+ [AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
|
|
+case $with_blas in
|
|
+ yes | "") ;;
|
|
+ no) ax_blas_ok=disable ;;
|
|
+ -* | */* | *.a | *.so | *.so.* | *.dylib | *.dylib.* | *.o)
|
|
+ BLAS_LIBS="$with_blas"
|
|
+ ;;
|
|
+ *) BLAS_LIBS="-l$with_blas" ;;
|
|
+esac
|
|
+
|
|
+# Get fortran linker names of BLAS functions to check for.
|
|
+AC_F77_FUNC(sgemm)
|
|
+AC_F77_FUNC(dgemm)
|
|
+
|
|
+ax_blas_save_LIBS="$LIBS"
|
|
+LIBS="$LIBS $FLIBS"
|
|
+
|
|
+# First, check BLAS_LIBS environment variable
|
|
+if test $ax_blas_ok = no; then
|
|
+if test "x$BLAS_LIBS" != x; then
|
|
+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
|
|
+ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
|
|
+ AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes], [BLAS_LIBS=""])
|
|
+ AC_MSG_RESULT($ax_blas_ok)
|
|
+ LIBS="$save_LIBS"
|
|
+fi
|
|
+fi
|
|
+
|
|
+# BLAS linked to by default? (happens on some supercomputers)
|
|
+if test $ax_blas_ok = no; then
|
|
+ save_LIBS="$LIBS"; LIBS="$LIBS"
|
|
+ AC_MSG_CHECKING([if $sgemm is being linked in already])
|
|
+ AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes])
|
|
+ AC_MSG_RESULT($ax_blas_ok)
|
|
+ LIBS="$save_LIBS"
|
|
+fi
|
|
+
|
|
+# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/)
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes
|
|
+ BLAS_LIBS="-lopenblas"])
|
|
+fi
|
|
+
|
|
+# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(atlas, ATL_xerbla,
|
|
+ [AC_CHECK_LIB(f77blas, $sgemm,
|
|
+ [AC_CHECK_LIB(cblas, cblas_dgemm,
|
|
+ [ax_blas_ok=yes
|
|
+ BLAS_LIBS="-lcblas -lf77blas -latlas"],
|
|
+ [], [-lf77blas -latlas])],
|
|
+ [], [-latlas])])
|
|
+fi
|
|
+
|
|
+# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(blas, $sgemm,
|
|
+ [AC_CHECK_LIB(dgemm, $dgemm,
|
|
+ [AC_CHECK_LIB(sgemm, $sgemm,
|
|
+ [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
|
|
+ [], [-lblas])],
|
|
+ [], [-lblas])])
|
|
+fi
|
|
+
|
|
+# BLAS in Intel MKL library?
|
|
+if test $ax_blas_ok = no; then
|
|
+ # MKL for gfortran
|
|
+ if test x"$ac_cv_fc_compiler_gnu" = xyes; then
|
|
+ # 64 bit
|
|
+ if test $host_cpu = x86_64; then
|
|
+ AC_CHECK_LIB(mkl_gf_lp64, $sgemm,
|
|
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
|
|
+ [-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread])
|
|
+ # 32 bit
|
|
+ elif test $host_cpu = i686; then
|
|
+ AC_CHECK_LIB(mkl_gf, $sgemm,
|
|
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],,
|
|
+ [-lmkl_gf -lmkl_sequential -lmkl_core -lpthread])
|
|
+ fi
|
|
+ # MKL for other compilers (Intel, PGI, ...?)
|
|
+ else
|
|
+ # 64-bit
|
|
+ if test $host_cpu = x86_64; then
|
|
+ AC_CHECK_LIB(mkl_intel_lp64, $sgemm,
|
|
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
|
|
+ [-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread])
|
|
+ # 32-bit
|
|
+ elif test $host_cpu = i686; then
|
|
+ AC_CHECK_LIB(mkl_intel, $sgemm,
|
|
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],,
|
|
+ [-lmkl_intel -lmkl_sequential -lmkl_core -lpthread])
|
|
+ fi
|
|
+ fi
|
|
+fi
|
|
+# Old versions of MKL
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread])
|
|
+fi
|
|
+
|
|
+# BLAS in Apple vecLib library?
|
|
+if test $ax_blas_ok = no; then
|
|
+ save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS"
|
|
+ AC_MSG_CHECKING([for $sgemm in -framework vecLib])
|
|
+ AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
|
|
+ AC_MSG_RESULT($ax_blas_ok)
|
|
+ LIBS="$save_LIBS"
|
|
+fi
|
|
+
|
|
+# BLAS in Alpha CXML library?
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"])
|
|
+fi
|
|
+
|
|
+# BLAS in Alpha DXML library? (now called CXML, see above)
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"])
|
|
+fi
|
|
+
|
|
+# BLAS in Sun Performance library?
|
|
+if test $ax_blas_ok = no; then
|
|
+ if test "x$GCC" != xyes; then # only works with Sun CC
|
|
+ AC_CHECK_LIB(sunmath, acosp,
|
|
+ [AC_CHECK_LIB(sunperf, $sgemm,
|
|
+ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
|
|
+ ax_blas_ok=yes],[],[-lsunmath])])
|
|
+ fi
|
|
+fi
|
|
+
|
|
+# BLAS in SCSL library? (SGI/Cray Scientific Library)
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"])
|
|
+fi
|
|
+
|
|
+# BLAS in SGIMATH library?
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(complib.sgimath, $sgemm,
|
|
+ [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
|
|
+fi
|
|
+
|
|
+# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(blas, $sgemm,
|
|
+ [AC_CHECK_LIB(essl, $sgemm,
|
|
+ [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
|
|
+ [], [-lblas $FLIBS])])
|
|
+fi
|
|
+
|
|
+# Generic BLAS library?
|
|
+if test $ax_blas_ok = no; then
|
|
+ AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"])
|
|
+fi
|
|
+
|
|
+AC_SUBST(BLAS_LIBS)
|
|
+
|
|
+LIBS="$ax_blas_save_LIBS"
|
|
+
|
|
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
|
|
+if test x"$ax_blas_ok" = xyes; then
|
|
+ ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
|
|
+ :
|
|
+else
|
|
+ ax_blas_ok=no
|
|
+ $2
|
|
+fi
|
|
+])dnl AX_BLAS
|
|
diff --git a/m4/ax_code_coverage.m4 b/m4/ax_code_coverage.m4
|
|
new file mode 100644
|
|
--- /dev/null
|
|
+++ b/m4/ax_code_coverage.m4
|
|
@@ -0,0 +1,271 @@
|
|
+# ===========================================================================
|
|
+# https://www.gnu.org/software/autoconf-archive/ax_code_coverage.html
|
|
+# ===========================================================================
|
|
+#
|
|
+# SYNOPSIS
|
|
+#
|
|
+# AX_CODE_COVERAGE()
|
|
+#
|
|
+# DESCRIPTION
|
|
+#
|
|
+# Defines CODE_COVERAGE_CPPFLAGS, CODE_COVERAGE_CFLAGS,
|
|
+# CODE_COVERAGE_CXXFLAGS and CODE_COVERAGE_LIBS which should be included
|
|
+# in the CPPFLAGS, CFLAGS CXXFLAGS and LIBS/LIBADD variables of every
|
|
+# build target (program or library) which should be built with code
|
|
+# coverage support. Also defines CODE_COVERAGE_RULES which should be
|
|
+# substituted in your Makefile; and $enable_code_coverage which can be
|
|
+# used in subsequent configure output. CODE_COVERAGE_ENABLED is defined
|
|
+# and substituted, and corresponds to the value of the
|
|
+# --enable-code-coverage option, which defaults to being disabled.
|
|
+#
|
|
+# Test also for gcov program and create GCOV variable that could be
|
|
+# substituted.
|
|
+#
|
|
+# Note that all optimization flags in CFLAGS must be disabled when code
|
|
+# coverage is enabled.
|
|
+#
|
|
+# Usage example:
|
|
+#
|
|
+# configure.ac:
|
|
+#
|
|
+# AX_CODE_COVERAGE
|
|
+#
|
|
+# Makefile.am:
|
|
+#
|
|
+# @CODE_COVERAGE_RULES@
|
|
+# my_program_LIBS = ... $(CODE_COVERAGE_LIBS) ...
|
|
+# my_program_CPPFLAGS = ... $(CODE_COVERAGE_CPPFLAGS) ...
|
|
+# my_program_CFLAGS = ... $(CODE_COVERAGE_CFLAGS) ...
|
|
+# my_program_CXXFLAGS = ... $(CODE_COVERAGE_CXXFLAGS) ...
|
|
+#
|
|
+# This results in a "check-code-coverage" rule being added to any
|
|
+# Makefile.am which includes "@CODE_COVERAGE_RULES@" (assuming the module
|
|
+# has been configured with --enable-code-coverage). Running `make
|
|
+# check-code-coverage` in that directory will run the module's test suite
|
|
+# (`make check`) and build a code coverage report detailing the code which
|
|
+# was touched, then print the URI for the report.
|
|
+#
|
|
+# In earlier versions of this macro, CODE_COVERAGE_LDFLAGS was defined
|
|
+# instead of CODE_COVERAGE_LIBS. They are both still defined, but use of
|
|
+# CODE_COVERAGE_LIBS is preferred for clarity; CODE_COVERAGE_LDFLAGS is
|
|
+# deprecated. They have the same value.
|
|
+#
|
|
+# This code was derived from Makefile.decl in GLib, originally licenced
|
|
+# under LGPLv2.1+.
|
|
+#
|
|
+# LICENSE
|
|
+#
|
|
+# Copyright (c) 2012, 2016 Philip Withnall
|
|
+# Copyright (c) 2012 Xan Lopez
|
|
+# Copyright (c) 2012 Christian Persch
|
|
+# Copyright (c) 2012 Paolo Borelli
|
|
+# Copyright (c) 2012 Dan Winship
|
|
+# Copyright (c) 2015 Bastien ROUCARIES
|
|
+#
|
|
+# This library is free software; you can redistribute it and/or modify it
|
|
+# under the terms of the GNU Lesser General Public License as published by
|
|
+# the Free Software Foundation; either version 2.1 of the License, or (at
|
|
+# your option) any later version.
|
|
+#
|
|
+# This library is distributed in the hope that it will be useful, but
|
|
+# WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser
|
|
+# General Public License for more details.
|
|
+#
|
|
+# You should have received a copy of the GNU Lesser General Public License
|
|
+# along with this program. If not, see <https://www.gnu.org/licenses/>.
|
|
+
|
|
+#serial 27
|
|
+
|
|
+AC_DEFUN([_AX_CODE_COVERAGE_ENABLED],[
|
|
+ # check for gcov
|
|
+ AC_CHECK_TOOL([GCOV],
|
|
+ [$_AX_CODE_COVERAGE_GCOV_PROG_WITH],
|
|
+ [:])
|
|
+ AS_IF([test "X$GCOV" = "X:"],
|
|
+ [AC_MSG_ERROR([gcov is needed to do coverage])])
|
|
+ AC_SUBST([GCOV])
|
|
+
|
|
+ dnl Check if gcc is being used
|
|
+ AS_IF([ test "$GCC" = "no" ], [
|
|
+ AC_MSG_ERROR([not compiling with gcc, which is required for gcov code coverage])
|
|
+ ])
|
|
+
|
|
+ AC_CHECK_PROG([LCOV], [lcov], [lcov])
|
|
+ AC_CHECK_PROG([GENHTML], [genhtml], [genhtml])
|
|
+
|
|
+ AS_IF([ test x"$LCOV" = x ], [
|
|
+ AC_MSG_ERROR([To enable code coverage reporting you must have lcov installed])
|
|
+ ])
|
|
+
|
|
+ AS_IF([ test x"$GENHTML" = x ], [
|
|
+ AC_MSG_ERROR([Could not find genhtml from the lcov package])
|
|
+ ])
|
|
+
|
|
+ dnl Build the code coverage flags
|
|
+ dnl Define CODE_COVERAGE_LDFLAGS for backwards compatibility
|
|
+ CODE_COVERAGE_CPPFLAGS="-DNDEBUG"
|
|
+ CODE_COVERAGE_CFLAGS="-O0 -g -fprofile-arcs -ftest-coverage"
|
|
+ CODE_COVERAGE_CXXFLAGS="-O0 -g -fprofile-arcs -ftest-coverage"
|
|
+ CODE_COVERAGE_LIBS="-lgcov"
|
|
+ CODE_COVERAGE_LDFLAGS="$CODE_COVERAGE_LIBS"
|
|
+
|
|
+ AC_SUBST([CODE_COVERAGE_CPPFLAGS])
|
|
+ AC_SUBST([CODE_COVERAGE_CFLAGS])
|
|
+ AC_SUBST([CODE_COVERAGE_CXXFLAGS])
|
|
+ AC_SUBST([CODE_COVERAGE_LIBS])
|
|
+ AC_SUBST([CODE_COVERAGE_LDFLAGS])
|
|
+
|
|
+ [CODE_COVERAGE_RULES_CHECK='
|
|
+ -$(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) -k check
|
|
+ $(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) code-coverage-capture
|
|
+']
|
|
+ [CODE_COVERAGE_RULES_CAPTURE='
|
|
+ $(code_coverage_v_lcov_cap)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --capture --output-file "$(CODE_COVERAGE_OUTPUT_FILE).tmp" --test-name "$(call code_coverage_sanitize,$(PACKAGE_NAME)-$(PACKAGE_VERSION))" --no-checksum --compat-libtool $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_OPTIONS)
|
|
+ $(code_coverage_v_lcov_ign)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --remove "$(CODE_COVERAGE_OUTPUT_FILE).tmp" "/tmp/*" $(CODE_COVERAGE_IGNORE_PATTERN) --output-file "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_RMOPTS)
|
|
+ -@rm -f $(CODE_COVERAGE_OUTPUT_FILE).tmp
|
|
+ $(code_coverage_v_genhtml)LANG=C $(GENHTML) $(code_coverage_quiet) $(addprefix --prefix ,$(CODE_COVERAGE_DIRECTORY)) --output-directory "$(CODE_COVERAGE_OUTPUT_DIRECTORY)" --title "$(PACKAGE_NAME)-$(PACKAGE_VERSION) Code Coverage" --legend --show-details "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_GENHTML_OPTIONS)
|
|
+ @echo "file://$(abs_builddir)/$(CODE_COVERAGE_OUTPUT_DIRECTORY)/index.html"
|
|
+']
|
|
+ [CODE_COVERAGE_RULES_CLEAN='
|
|
+clean: code-coverage-clean
|
|
+distclean: code-coverage-clean
|
|
+code-coverage-clean:
|
|
+ -$(LCOV) --directory $(top_builddir) -z
|
|
+ -rm -rf $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_FILE).tmp $(CODE_COVERAGE_OUTPUT_DIRECTORY)
|
|
+ -find . \( -name "*.gcda" -o -name "*.gcno" -o -name "*.gcov" \) -delete
|
|
+']
|
|
+])
|
|
+
|
|
+AC_DEFUN([_AX_CODE_COVERAGE_DISABLED],[
|
|
+ [CODE_COVERAGE_RULES_CHECK='
|
|
+ @echo "Need to reconfigure with --enable-code-coverage"
|
|
+ ']
|
|
+ CODE_COVERAGE_RULES_CAPTURE="$CODE_COVERAGE_RULES_CHECK"
|
|
+ CODE_COVERAGE_RULES_CLEAN=''
|
|
+])
|
|
+
|
|
+AC_DEFUN([AX_CODE_COVERAGE],[
|
|
+ dnl Check for --enable-code-coverage
|
|
+
|
|
+ # allow to override gcov location
|
|
+ AC_ARG_WITH([gcov],
|
|
+ [AS_HELP_STRING([--with-gcov[=GCOV]], [use given GCOV for coverage (GCOV=gcov).])],
|
|
+ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=$with_gcov],
|
|
+ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=gcov])
|
|
+
|
|
+ AC_MSG_CHECKING([whether to build with code coverage support])
|
|
+ AC_ARG_ENABLE([code-coverage],
|
|
+ AS_HELP_STRING([--enable-code-coverage],
|
|
+ [Whether to enable code coverage support]),,
|
|
+ enable_code_coverage=no)
|
|
+
|
|
+ AM_CONDITIONAL([CODE_COVERAGE_ENABLED], [test "x$enable_code_coverage" = xyes])
|
|
+ AC_SUBST([CODE_COVERAGE_ENABLED], [$enable_code_coverage])
|
|
+ AC_MSG_RESULT($enable_code_coverage)
|
|
+
|
|
+ AS_IF([ test "x$enable_code_coverage" = xyes ], [
|
|
+ _AX_CODE_COVERAGE_ENABLED
|
|
+ ], [
|
|
+ _AX_CODE_COVERAGE_DISABLED
|
|
+ ])
|
|
+
|
|
+[CODE_COVERAGE_RULES='
|
|
+# Code coverage
|
|
+#
|
|
+# Optional:
|
|
+# - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting.
|
|
+# Multiple directories may be specified, separated by whitespace.
|
|
+# (Default: $(top_builddir))
|
|
+# - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated
|
|
+# by lcov for code coverage. (Default:
|
|
+# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info)
|
|
+# - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage
|
|
+# reports to be created. (Default:
|
|
+# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage)
|
|
+# - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage,
|
|
+# set to 0 to disable it and leave empty to stay with the default.
|
|
+# (Default: empty)
|
|
+# - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov
|
|
+# instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE)
|
|
+# - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov
|
|
+# instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT)
|
|
+# - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov
|
|
+# - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the
|
|
+# collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH)
|
|
+# - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov
|
|
+# instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT)
|
|
+# - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering
|
|
+# lcov instance. (Default: empty)
|
|
+# - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov
|
|
+# instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT)
|
|
+# - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the
|
|
+# genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE)
|
|
+# - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml
|
|
+# instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT)
|
|
+# - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore
|
|
+#
|
|
+# The generated report will be titled using the $(PACKAGE_NAME) and
|
|
+# $(PACKAGE_VERSION). In order to add the current git hash to the title,
|
|
+# use the git-version-gen script, available online.
|
|
+
|
|
+# Optional variables
|
|
+CODE_COVERAGE_DIRECTORY ?= $(top_builddir)
|
|
+CODE_COVERAGE_OUTPUT_FILE ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info
|
|
+CODE_COVERAGE_OUTPUT_DIRECTORY ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage
|
|
+CODE_COVERAGE_BRANCH_COVERAGE ?=
|
|
+CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\
|
|
+--rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE))
|
|
+CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT)
|
|
+CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)"
|
|
+CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH)
|
|
+CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT)
|
|
+CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?=
|
|
+CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT)
|
|
+CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\
|
|
+$(if $(CODE_COVERAGE_BRANCH_COVERAGE),\
|
|
+--rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE))
|
|
+CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT)
|
|
+CODE_COVERAGE_IGNORE_PATTERN ?=
|
|
+
|
|
+GITIGNOREFILES ?=
|
|
+GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY)
|
|
+
|
|
+code_coverage_v_lcov_cap = $(code_coverage_v_lcov_cap_$(V))
|
|
+code_coverage_v_lcov_cap_ = $(code_coverage_v_lcov_cap_$(AM_DEFAULT_VERBOSITY))
|
|
+code_coverage_v_lcov_cap_0 = @echo " LCOV --capture"\
|
|
+ $(CODE_COVERAGE_OUTPUT_FILE);
|
|
+code_coverage_v_lcov_ign = $(code_coverage_v_lcov_ign_$(V))
|
|
+code_coverage_v_lcov_ign_ = $(code_coverage_v_lcov_ign_$(AM_DEFAULT_VERBOSITY))
|
|
+code_coverage_v_lcov_ign_0 = @echo " LCOV --remove /tmp/*"\
|
|
+ $(CODE_COVERAGE_IGNORE_PATTERN);
|
|
+code_coverage_v_genhtml = $(code_coverage_v_genhtml_$(V))
|
|
+code_coverage_v_genhtml_ = $(code_coverage_v_genhtml_$(AM_DEFAULT_VERBOSITY))
|
|
+code_coverage_v_genhtml_0 = @echo " GEN " $(CODE_COVERAGE_OUTPUT_DIRECTORY);
|
|
+code_coverage_quiet = $(code_coverage_quiet_$(V))
|
|
+code_coverage_quiet_ = $(code_coverage_quiet_$(AM_DEFAULT_VERBOSITY))
|
|
+code_coverage_quiet_0 = --quiet
|
|
+
|
|
+# sanitizes the test-name: replaces with underscores: dashes and dots
|
|
+code_coverage_sanitize = $(subst -,_,$(subst .,_,$(1)))
|
|
+
|
|
+# Use recursive makes in order to ignore errors during check
|
|
+check-code-coverage:'"$CODE_COVERAGE_RULES_CHECK"'
|
|
+
|
|
+# Capture code coverage data
|
|
+code-coverage-capture: code-coverage-capture-hook'"$CODE_COVERAGE_RULES_CAPTURE"'
|
|
+
|
|
+# Hook rule executed before code-coverage-capture, overridable by the user
|
|
+code-coverage-capture-hook:
|
|
+
|
|
+'"$CODE_COVERAGE_RULES_CLEAN"'
|
|
+
|
|
+A''M_DISTCHECK_CONFIGURE_FLAGS ?=
|
|
+A''M_DISTCHECK_CONFIGURE_FLAGS += --disable-code-coverage
|
|
+
|
|
+.PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean
|
|
+']
|
|
+
|
|
+ AC_SUBST([CODE_COVERAGE_RULES])
|
|
+ m4_ifdef([_AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE([CODE_COVERAGE_RULES])])
|
|
+])
|
|
diff --git a/m4/ax_lapack.m4 b/m4/ax_lapack.m4
|
|
new file mode 100644
|
|
--- /dev/null
|
|
+++ b/m4/ax_lapack.m4
|
|
@@ -0,0 +1,134 @@
|
|
+# ===========================================================================
|
|
+# https://www.gnu.org/software/autoconf-archive/ax_lapack.html
|
|
+# ===========================================================================
|
|
+#
|
|
+# SYNOPSIS
|
|
+#
|
|
+# AX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
|
|
+#
|
|
+# DESCRIPTION
|
|
+#
|
|
+# This macro looks for a library that implements the LAPACK linear-algebra
|
|
+# interface (see http://www.netlib.org/lapack/). On success, it sets the
|
|
+# LAPACK_LIBS output variable to hold the requisite library linkages.
|
|
+#
|
|
+# To link with LAPACK, you should link with:
|
|
+#
|
|
+# $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS
|
|
+#
|
|
+# in that order. BLAS_LIBS is the output variable of the AX_BLAS macro,
|
|
+# called automatically. FLIBS is the output variable of the
|
|
+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
|
|
+# sometimes necessary in order to link with F77 libraries. Users will also
|
|
+# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
|
|
+# reason.
|
|
+#
|
|
+# The user may also use --with-lapack=<lib> in order to use some specific
|
|
+# LAPACK library <lib>. In order to link successfully, however, be aware
|
|
+# that you will probably need to use the same Fortran compiler (which can
|
|
+# be set via the F77 env. var.) as was used to compile the LAPACK and BLAS
|
|
+# libraries.
|
|
+#
|
|
+# ACTION-IF-FOUND is a list of shell commands to run if a LAPACK library
|
|
+# is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it
|
|
+# is not found. If ACTION-IF-FOUND is not specified, the default action
|
|
+# will define HAVE_LAPACK.
|
|
+#
|
|
+# LICENSE
|
|
+#
|
|
+# Copyright (c) 2009 Steven G. Johnson <stevenj@alum.mit.edu>
|
|
+# Copyright (c) 2019 Geoffrey M. Oxberry <goxberry@gmail.com>
|
|
+#
|
|
+# This program is free software: you can redistribute it and/or modify it
|
|
+# under the terms of the GNU General Public License as published by the
|
|
+# Free Software Foundation, either version 3 of the License, or (at your
|
|
+# option) any later version.
|
|
+#
|
|
+# This program is distributed in the hope that it will be useful, but
|
|
+# WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
|
|
+# Public License for more details.
|
|
+#
|
|
+# You should have received a copy of the GNU General Public License along
|
|
+# with this program. If not, see <https://www.gnu.org/licenses/>.
|
|
+#
|
|
+# As a special exception, the respective Autoconf Macro's copyright owner
|
|
+# gives unlimited permission to copy, distribute and modify the configure
|
|
+# scripts that are the output of Autoconf when processing the Macro. You
|
|
+# need not follow the terms of the GNU General Public License when using
|
|
+# or distributing such scripts, even though portions of the text of the
|
|
+# Macro appear in them. The GNU General Public License (GPL) does govern
|
|
+# all other use of the material that constitutes the Autoconf Macro.
|
|
+#
|
|
+# This special exception to the GPL applies to versions of the Autoconf
|
|
+# Macro released by the Autoconf Archive. When you make and distribute a
|
|
+# modified version of the Autoconf Macro, you may extend this special
|
|
+# exception to the GPL to apply to your modified version as well.
|
|
+
|
|
+#serial 10
|
|
+
|
|
+AU_ALIAS([ACX_LAPACK], [AX_LAPACK])
|
|
+AC_DEFUN([AX_LAPACK], [
|
|
+AC_REQUIRE([AX_BLAS])
|
|
+ax_lapack_ok=no
|
|
+
|
|
+AC_ARG_WITH(lapack,
|
|
+ [AS_HELP_STRING([--with-lapack=<lib>], [use LAPACK library <lib>])])
|
|
+case $with_lapack in
|
|
+ yes | "") ;;
|
|
+ no) ax_lapack_ok=disable ;;
|
|
+ -* | */* | *.a | *.so | *.so.* | *.dylib | *.dylib.* | *.o)
|
|
+ LAPACK_LIBS="$with_lapack"
|
|
+ ;;
|
|
+ *) LAPACK_LIBS="-l$with_lapack" ;;
|
|
+esac
|
|
+
|
|
+# Get fortran linker name of LAPACK function to check for.
|
|
+AC_F77_FUNC(cheev)
|
|
+
|
|
+# We cannot use LAPACK if BLAS is not found
|
|
+if test "x$ax_blas_ok" != xyes; then
|
|
+ ax_lapack_ok=noblas
|
|
+ LAPACK_LIBS=""
|
|
+fi
|
|
+
|
|
+# First, check LAPACK_LIBS environment variable
|
|
+if test "x$LAPACK_LIBS" != x; then
|
|
+ save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS"
|
|
+ AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS])
|
|
+ AC_LINK_IFELSE([AC_LANG_CALL([], [$cheev])], [ax_lapack_ok=yes], [LAPACK_LIBS=""])
|
|
+ AC_MSG_RESULT($ax_lapack_ok)
|
|
+ LIBS="$save_LIBS"
|
|
+ if test $ax_lapack_ok = no; then
|
|
+ LAPACK_LIBS=""
|
|
+ fi
|
|
+fi
|
|
+
|
|
+# LAPACK linked to by default? (is sometimes included in BLAS lib)
|
|
+if test $ax_lapack_ok = no; then
|
|
+ save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS"
|
|
+ AC_CHECK_FUNC($cheev, [ax_lapack_ok=yes])
|
|
+ LIBS="$save_LIBS"
|
|
+fi
|
|
+
|
|
+# Generic LAPACK library?
|
|
+for lapack in lapack lapack_rs6k; do
|
|
+ if test $ax_lapack_ok = no; then
|
|
+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
|
|
+ AC_CHECK_LIB($lapack, $cheev,
|
|
+ [ax_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS])
|
|
+ LIBS="$save_LIBS"
|
|
+ fi
|
|
+done
|
|
+
|
|
+AC_SUBST(LAPACK_LIBS)
|
|
+
|
|
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
|
|
+if test x"$ax_lapack_ok" = xyes; then
|
|
+ ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1])
|
|
+ :
|
|
+else
|
|
+ ax_lapack_ok=no
|
|
+ $2
|
|
+fi
|
|
+])dnl AX_LAPACK
|
|
diff --git a/spqr.pc.in b/spqr.pc.in
|
|
new file mode 100644
|
|
--- /dev/null
|
|
+++ b/spqr.pc.in
|
|
@@ -0,0 +1,13 @@
|
|
+prefix=@prefix@
|
|
+exec_prefix=@exec_prefix@
|
|
+libdir=@libdir@
|
|
+includedir=@includedir@
|
|
+
|
|
+Name: @PACKAGE_NAME@
|
|
+Description: Multifrontal sparse QR factorization
|
|
+Version: @PACKAGE_VERSION@
|
|
+URL: @PACKAGE_URL@
|
|
+Requires.private: cholmod suitesparseconfig
|
|
+Libs: -L${libdir} -lspqr
|
|
+Libs.private: @TBB_LIBS@ @LAPACK_LIBS@ @BLAS_LIBS@ -lm
|
|
+Cflags: -I${includedir}/spqr
|