mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-25 10:03:03 +01:00
20 lines
977 B
Text
20 lines
977 B
Text
The programs part of the Staden package provide an excellent and fully
|
|
developed set of DNA sequence assembly, editing, analysis and more.
|
|
|
|
Some of its features include:
|
|
GAP4 - Performs assembly, contig joining, assembly checking, repeat
|
|
search, experiment suggestion, read pair analysis and contig
|
|
editing.
|
|
GAP5 - The new development version of Gap4, designed to work with the
|
|
large volumes of data attainable through the newer sequencing
|
|
technologies.
|
|
PREGAP4 - Provides a graphical user interface to set up the processing
|
|
required to prepare trace data for assembly or analysis.
|
|
SPIN - Compares pairs of sequences in many ways, often presenting its
|
|
results graphically and has a sliding sequence window linked to
|
|
the plots.
|
|
TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF
|
|
trace files.
|
|
|
|
For more information and citing, visit Staden's web page and check the
|
|
"References" file in the documentation.
|