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21 lines
877 B
Text
21 lines
877 B
Text
Aline: An Extensible WYSIWYG Protein Sequence Alignment Editor for
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Publication Quality Figures.
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Aline is an interactive perl/tk application which can read common
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sequence alignment formats which the user can then alter, embellish,
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markup etc to produce the kind of sequence figure commonly found in
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biochemical articles.
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NOTE
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The default row length is 100 residues. If you want to change that to
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something else (e.g. 1000) pass ROW=1000 to the script.
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OPTIONAL
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Although not needed for running Aline, clustalw and mkDSSP are
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desirable for its complete functionality. A third tool is CHAINSAW,
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part of the CCP4 suite (http://www.ccp4.ac.uk/). Visit the web site
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for more information and installation instructions if you want it.
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CITING
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Bond, C.S. and Schuttelkopf, A.W. (2009), Acta cryst. D65, 510-512
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https://crystal.scb.uwa.edu.au/charlie/software/aline/actad_65_510.pdf
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