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18 lines
806 B
Text
18 lines
806 B
Text
LalnView is a graphical program for visualizing local alignments
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between two sequences (protein or nucleic acids). Sequences are
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represented by colored rectangles to give an overall picture of the
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similarities between the two sequences. Blocks of similarity between
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the two sequences are colored according to the degree of identity
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between segments.
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A suitable alignment tool for protein sequences is SIM at ExPASy:
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https://web.expasy.org/sim/
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SIM finds a user-defined number of best non-intersecting alignments
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between two protein sequences or within a sequence. Once the alignment
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is computed, you can view it using LalnView.
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For details and citation:
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Duret, L., Gasteiger, E. and Perriere, G. (1996) LalnView: a
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graphical viewer for pairwise sequence alignments. Comput. Applic.
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Biosci., 12, 507-510
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