Commit graph

75494 commits

Author SHA1 Message Date
Petar Petrov
90d81a8782
academic/snpEff: switch to adoptopenjdk
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:14 +07:00
Petar Petrov
c429be38a7
academic/sequence-analysis: switch to adoptopenjdk
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:14 +07:00
Petar Petrov
26e3987764
academic/seqkit: update for version 0.16.0
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:14 +07:00
Petar Petrov
6eeba3dd83
academic/seaview: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:14 +07:00
Petar Petrov
277d99e068
academic/samtools-legacy: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:14 +07:00
Petar Petrov
bba62ec073
academic/primer3: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:14 +07:00
Petar Petrov
d3f3618a06
academic/prank-msa: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:14 +07:00
Petar Petrov
e0ebf64b3f
academic/plasmidomics: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:13 +07:00
Petar Petrov
2fdc935241
academic/perlprimer: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:13 +07:00
Petar Petrov
25c3cd71e8
academic/paml: fix build (-fcommon)
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:13 +07:00
Petar Petrov
d2d4e55848
academic/pal2nal: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:13 +07:00
Petar Petrov
a65a065927
academic/ncbi-rmblastn: updated copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:13 +07:00
Petar Petrov
bbcb3185d7
academic/ncbi-blast+. update for version 2.11.0
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:13 +07:00
Petar Petrov
ac5d02aef3
academic/ncbi-blast: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:13 +07:00
Petar Petrov
3682b579dd
academic/muscle: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:12 +07:00
Petar Petrov
eaa1ac6069
academic/mrbayes: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:12 +07:00
Petar Petrov
f64dd43a12
libraries/libcifpp: added. Dependency for mkDSSP
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:12 +07:00
Petar Petrov
159c498151
academic/mkDSSP. update for version 4.0_git6338c83
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:12 +07:00
Petar Petrov
045de4bad3
academic/meme-suite: update for version 5.3.3
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:12 +07:00
Petar Petrov
b809ee9794
academic/meme-db-tgene: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:12 +07:00
Petar Petrov
002098312f
academic/meme-db-motif: update for version 12.21
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:12 +07:00
Petar Petrov
88e83b22a1
academic/meme-db-gomo: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:11 +07:00
Petar Petrov
1213e0ef77
academic/megax: update for version 10.2.5_1
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:11 +07:00
Petar Petrov
d8a200cc2a
academic/mafft: update for version 7.475
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:11 +07:00
Petar Petrov
f97bef7cfa
academic/lalnview: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:11 +07:00
Petar Petrov
12b429698b
academic/kraken: update copyright year
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:11 +07:00
Petar Petrov
f327f7002a
academic/jellyfish_k-mer: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:11 +07:00
Petar Petrov
91ae47117f
academic/jalview: update for version 2.11.1.4
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:11 +07:00
Petar Petrov
71d201f92c
academic/io_lib. update for version 1.14.14
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:11 +07:00
Petar Petrov
f242439635
academic/hyphy/: update for version 2.5.31
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:10 +07:00
Petar Petrov
91059909c5
academic/genpak: misc cleanups
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:10 +07:00
Petar Petrov
4a818f17e3
academic/genometools: add patch for gcc10 and fix build
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:10 +07:00
Petar Petrov
8493b05234
academic/geneconv: misc cleanups
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:10 +07:00
Petar Petrov
103e8ef659
academic/gelemental: remove unnecessary patch
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:10 +07:00
Petar Petrov
d5eb75058c
academic/gchemutils: update copyright info
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:10 +07:00
Petar Petrov
35850a24ad
academic/finchtv: update webpage link
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:10 +07:00
Petar Petrov
5439426bc8
academic/fiji: update for version 20201104_1356
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:09 +07:00
Petar Petrov
e39996cfac
academic/exonerate: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:09 +07:00
Petar Petrov
39ea44df1a
academic/diamond: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:09 +07:00
Petar Petrov
5ee86400cf
academic/datamash: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:09 +07:00
Petar Petrov
19c74ff164
academic/cutadapt: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:09 +07:00
Petar Petrov
cd2507649b
academic/cufflinks: use binaries
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:09 +07:00
Petar Petrov
f703b64e18
academic/clustalw: misc cleanups
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:08 +07:00
Petar Petrov
31d4b2d95b
academic/clustalo: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:08 +07:00
Petar Petrov
34f2b37f23
academic/clark-ugene: update copyright year
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:08 +07:00
Petar Petrov
0bb12103cd
academic/cistrome-mdseqpos: fis REQUIRES and build with python2
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:08 +07:00
Petar Petrov
aad0763840
academic/cistrome-extra: fix download link
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:08 +07:00
Petar Petrov
1dcb094055
academic/cistrome-conductGO: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:08 +07:00
Petar Petrov
0fa3033264
academic/cistrome-MACS: update copyright years
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:08 +07:00
Petar Petrov
a142fbd076
academic/cistrome-CEAS: update copyright year
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2021-05-18 23:40:07 +07:00