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1349 commits

Author SHA1 Message Date
Matteo Bernardini
6b365938ac academic/scipy: Fix dowload link. 
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
 2016-03-12 06:42:40 +07:00
Petar Petrov
c1e6058dcc academic/ugene: Updated for version 1.21.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-03-06 18:50:22 +07:00
Willy Sudiarto Raharjo
2a24e2765d academic/openmodelica: Removed (no longer build). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-03-06 09:30:22 +07:00
Jheengut Pritvi
7bab9815d4 academic/spatialite_gui: Update DOWNLOAD url. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-27 13:22:32 +07:00
David Spencer
6f1acb7518 academic/tophat: Support alternate tarball name. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-02-23 00:57:48 +07:00
Willy Sudiarto Raharjo
3a7ea11de4 multiple: Update email address. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-22 22:11:47 +07:00
Willy Sudiarto Raharjo
55988a5e80 academic/tophat: Fix Build. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-06 03:36:48 +07:00
Petar Petrov
1c78256490 academic/vcftools: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
380773085c academic/spades: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
6fffb27d21 academic/snpEff: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
b5925d8c21 academic/seaview: minor version bump 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-05 07:02:20 +07:00
Petar Petrov
8af4cfe858 academic/QtiPlot: correct a few paths 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-05 07:02:20 +07:00
Petar Petrov
8b9883543c academic/mrbayes: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
09248e745f academic/mafft: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
2019564010 academic/ij-plugins-LOCI: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
932b7d0962 academic/genometools: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
d441e80884 academic/fastqc: version bump 2016-02-05 07:02:20 +07:00
Willy Sudiarto Raharjo
ff0fe8c149 academic/sage: Updated for version 7.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-26 21:50:52 +07:00
Benjamin Trigona-Harany
0e834e7268 academic/cld2: Updated for version 20150820. 
Signed-off-by: Benjamin Trigona-Harany <bosth@alumni.sfu.ca>
 2016-01-26 18:59:05 +07:00
Willy Sudiarto Raharjo
03815961c1 academic/stellarium: Updated for version 0.14.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-19 21:56:08 +07:00
David Spencer
29faff7fb3 academic/seaview: Build with extra/fltk. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-01-16 23:36:53 -06:00
Petar Petrov
ec514e32c4 Multiple: update email, year and slack-desc 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
Robby Workman
c6a2f7b06d Multiple: Fix .info and README (gtkmm refs) 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
Robby Workman
c2e9c35cda Multiple: Fix .info and README (Cython refs) 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
a723699906 academic/coq: Updated for version 8.4pl6. 
Fixes build failure with make-4.1.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
948f0ac5b9 academic/celestia: Patched for libpng16. 
Fixes build failure on -current.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
fc050f8db5 academic/arka: Fix building with gcc-5.2.0. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
27a8de224c academic/Kst: Patched for gsl-2.1. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
25ccacc72f academic/EMBASSY: Fix build with gcc5. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
91a40ef1e4 academic/flashqard: Patched to build on -current. 
Fails to build with qt-4.8.7.
Template cleanups.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
4cbe56e524 academic/gelemental: Force std=c++11 in the CXXFLAGS. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
f72377834b academic/genius: Force std=gnu89 in CFLAGS/CXXFLAGS. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
ce056c6ef1 academic/pspp: Updated for version 0.8.5. 
Fixes build failure on -current.
-ltermcap fixes bogus <wchar.h> error in configure.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
edbfa85153 academic/gretl: Use -j1 in SlackBuild. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
83338749ef academic/labplot2: Fixed build with gcc-5.2.0. 
Use SBo standard cmake template to add -fpermissive more easily.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
1b44b838f6 academic/grpn: Fixed build with gcc-5.2.0. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
32be7da4a5 academic/ktikz: Fix CMakeLists.txt. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
ecaab058cc academic/itex2mml: Updated for version 1.5.1. 
Fixed build failure with bison-3.
Removed bashisms and hardcoded Ruby version.
(The itexToMML.tar.gz version was already 1.5.1...)

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
b8f6fbd9c6 academic/root: Patched for gsl-2.1. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
e21d48b8bb academic/root: Updated for version 5.34.32. 
Fixes build failure on -current.

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
b777fd4907 academic/avogadro: Fixed underlinking with gcc-5.3.0. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
1f4d309466 academic/avogadro: Patched to link X properly. 
Underlinking error (cmake-3/gcc-5).

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
3c3c71911d academic/avogadro: Patched for building with eigen3. 
Thanks to slack_jack and ponce.

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
167b044285 academic/QtiPlot: Patched for gsl-2.1. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
9434f258ee academic/QtiPlot: Patched for building with sip-4.16. 
Also fixed library plugin location.

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
7f020478b9 academic/QtiPlot: Patched for building with libpng-1.6. 
Thanks to slack_jack and ponce.

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
Robby Workman
8a3bf9cddb Multiple: Fixed .info file (removed gsl) 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
Robby Workman
c07ecd9864 Multiple: Fixed .info file (removed eigen3) 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
Robby Workman
065bbe93dc Multiple: Fixed .info file (removed pysetuptools) 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
Robby Workman
16c3cb8406 academic/spatialite-tools: Fixed download link 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-01-10 21:36:31 -06:00
David Spencer
ce4d71f36c academic/fet: Fixed typo in slack-desc. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-01-10 21:34:39 -06:00
Kyle Guinn
f15f260c74 academic/spqr: Updated for version 2.0.2. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
52f7ccf717 academic/umfpack: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
89c6755c47 academic/klu: Updated for version 1.3.3. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
c7f04a87c5 academic/cholmod: Updated for version 3.0.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
c13be7d935 academic/rbio: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
c067a7585f academic/btf: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
eee5b966f2 academic/ldl: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
a29f9c693c academic/cxsparse: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
131af64210 academic/csparse: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
33e6831f7a academic/ccolamd: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
521f1a670b academic/colamd: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
2328ded1f3 academic/camd: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
d4b701f2e3 academic/amd: BUILD bump for SuiteSparse 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
fbcc28733e academic/suitesparseconfig: Updated for version 4.4.6. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Kyle Guinn
ff76990b39 academic/cblas: Updated for version 3.6.0 + new maintainer. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2016-01-09 07:12:48 +07:00
Tim Dickson
7ef22f5853 academic/sword-data-kjv: Update MD5SUM. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-09 07:12:22 +07:00
David Spencer
f668f17f75 academic/openmodelica: Fix build failure. 
"cp: cannot stat '././build/include/omc/i486-linux-gnu/omc/antlr3'"

Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-01-07 22:21:23 +00:00
David Spencer
cab5c4d4bf academic/sundials: Use /usr/lib64 on x86_64. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-01-07 01:40:19 +00:00
David Spencer
ffda167b71 academic/scilab: Fix .pc file location. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-01-07 01:39:05 +00:00
David Spencer
badb5b870a academic/fann: Fix .pc file location. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-01-07 00:24:13 +00:00
David Spencer
e9fde4660d academic/cld2: Fix file ownership. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-01-06 23:40:59 +00:00
David Spencer
6d4b476fd2 academic/antiprism: Compress man pages. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-01-06 23:38:29 +00:00
Larry Hajali
fe50170260 academic/freechartgeany: Updated for version 2.0.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-12-30 18:39:47 +07:00
Larry Hajali
4631847fad academic/wxMaxima: Updated for version 15.08.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-12-30 17:46:28 +07:00
Willy Sudiarto Raharjo
da160fb91b academic/sage: Updated for version 6.10. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-12-19 16:32:22 +07:00
R.S.Ananda Murthy
4f014c13a3 academic/fet: Updated for version 5.28.3. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-12-08 23:47:21 +07:00
R. S. Ananda Murthy
ca37b58ef6 academic/sundials: Updated for version 2.6.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-12-08 23:46:38 +07:00
Daniil Bratashov
17414bdd44 academic/gwyddion: Updated for version 2.43. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-12-03 23:44:25 +07:00
Willy Sudiarto Raharjo
66042d59e3 academic/spatialite-tools: Update DOWNLOAD url. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-12-03 17:45:38 +07:00
ArTourter
470fa57b2d academic/units: Updated for version 2.12. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-28 07:25:59 +07:00
Petar Petrov
5197067a03 academic/squizz: Fix VERSION. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-14 22:48:18 +07:00
Petar Petrov
452f9c8a5c academic/genometools: Updated for version 1.5.7. 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2015-11-14 07:07:34 +07:00
Petar Petrov
3030a9997b academic/io_lib: Updated for version 1.14.6. 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2015-11-14 07:07:34 +07:00
Petar Petrov
05d4adbc63 academic/squizz: Updated for version 0.99c. 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2015-11-14 07:07:34 +07:00
Petar Petrov
bb0faef860 academic/spades: Updated for version 3.6.1. 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2015-11-14 07:07:34 +07:00
Petar Petrov
ea74faef8d academic/zotero: Updated for version 4.0.28. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:13:32 +07:00
Petar Petrov
72a5c0c201 academic/vcftools: Updated for version 0.1.14_2_g78add55. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:12:27 +07:00
Petar Petrov
c61d2947f7 academic/tophat: Updated for version 2.1.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:11:21 +07:00
Petar Petrov
50f3c52598 academic/snpEff: Updated for version 4.1l. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:10:46 +07:00
Petar Petrov
9177640ee4 academic/sequence-analysis: Updated for version 1.7.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:09:52 +07:00
Petar Petrov
f5606e21e5 academic/ncbi-blast-plus: Updated for version 2.2.31. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:08:17 +07:00
Petar Petrov
9f78d8c85f academic/jalview: Updated for version 2.9. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:07:05 +07:00
Petar Petrov
3d4d6f4bb8 academic/ij-plugins-LOCI: Updated for version 5.1.5. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:05:06 +07:00
Petar Petrov
6e03e7b8f4 academic/cutadapt: Updated for version 1.9. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:04:26 +07:00
Petar Petrov
de351794dd academic/bedtools: Updated for version 2.25.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-11 23:02:49 +07:00
Daniil Bratashov
0f90383261 academic/wxmacmolplt: Update DOWNLOAD url. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-05 00:45:20 +07:00
Willy Sudiarto Raharjo
04d6e8f1a4 academic/gcompris: Updated for version 15.10. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-11-02 19:21:15 +07:00
Kyle Guinn
f9ce71876c academic/arpack-ng: Updated for version 3.3.0. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-10-31 08:33:23 +07:00
B. Watson
0c7784692a academic/jalview: Fix DOWNLOAD. 2015-10-31 08:33:10 +07:00