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academic/jalview: Updated for version 2.11.1.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
parent
9579608d99
commit
fe7468106d
3 changed files with 9 additions and 42 deletions
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@ -1,16 +1,2 @@
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#!/bin/sh
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#!/bin/sh
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java -jar /opt/jalview/jalview
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# This wrapper script is taken from Arch Linux AUR entry of jalview.
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# https://aur.archlinux.org/packages/jalview/
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# Maintainer of the PKGBUILD is Stefan Seemayer.
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progname="jalview"
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mainclass="jalview.bin.Jalview"
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basedir="/usr/share/java/$progname"
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# build classpath: all jars in $basedir
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cp=$( ls $basedir/*.jar | xargs echo | sed "s/ /:/g" );
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# run jar
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"$JAVA_HOME/bin/java" -cp $cp $mainclass
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@ -2,7 +2,7 @@
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# Slackware build script for jalview
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# Slackware build script for jalview
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# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
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# Copyright 2013-2020 Petar Petrov slackalaxy@gmail.com
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# All rights reserved.
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# All rights reserved.
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#
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#
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# Redistribution and use of this script, with or without modification, is
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# Redistribution and use of this script, with or without modification, is
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@ -22,15 +22,14 @@
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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# With help from the jalview PKGBUILD at Arch linux AUR:
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# https://aur.archlinux.org/packages/jalview/
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PRGNAM=jalview
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PRGNAM=jalview
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VERSION=${VERSION:-2.10.0b1}
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VERSION=${VERSION:-2.11.1.0}
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BUILD=${BUILD:-1}
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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TAG=${TAG:-_SBo}
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ARCH=noarch
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ARCH=noarch
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JAVA=j1.8
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CWD=$(pwd)
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CWD=$(pwd)
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TMP=${TMP:-/tmp/SBo}
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TMP=${TMP:-/tmp/SBo}
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@ -42,27 +41,11 @@ set -e
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rm -rf $PKG
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rm -rf $PKG
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mkdir -p $TMP $PKG $OUTPUT
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mkdir -p $TMP $PKG $OUTPUT
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cd $TMP
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cd $TMP
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rm -rf $PRGNAM-$VERSION
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tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
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cd $PRGNAM-$VERSION
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chown -R root:root .
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find -L . \
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
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-o -perm 511 \) -exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
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-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
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mkdir -p $PKG/usr/share/java/$PRGNAM
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install -D -m755 $CWD/$PRGNAM-all-$VERSION-$JAVA.jar $PKG/opt/$PRGNAM/$PRGNAM
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cp -a *.jar $PKG/usr/share/java/$PRGNAM
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# The wrapper is from Arch. Thank you!
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install -D -m755 $CWD/$PRGNAM $PKG/usr/bin/$PRGNAM
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install -D -m755 $CWD/$PRGNAM $PKG/usr/bin/$PRGNAM
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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cp -a \
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building.html exampleFeatures.txt LICENSE README_IA \
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$PKG/usr/doc/$PRGNAM-$VERSION
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cat $CWD/TheJalviewTutorial_screen.pdf > $PKG/usr/doc/$PRGNAM-$VERSION/Tutorial.pdf
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cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
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cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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@ -1,10 +1,8 @@
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PRGNAM="jalview"
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PRGNAM="jalview"
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VERSION="2.10.0b1"
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VERSION="2.11.1.0"
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HOMEPAGE="http://www.jalview.org/"
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HOMEPAGE="http://www.jalview.org/"
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DOWNLOAD="http://sourceforge.net/projects/sboppetrov/files/JalView/2.10/jalview-2.10.0b1.tar.gz \
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DOWNLOAD="http://www.jalview.org/getdown/release/jalview-all-2.11.1.0-j1.8.jar"
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http://sourceforge.net/projects/sboppetrov/files/JalView/TheJalviewTutorial_screen.pdf"
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MD5SUM="7f79b598a5bfd25d89adf6fe8c9b98f7"
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MD5SUM="fb5b30202210e21647ecc7da5242bab3 \
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5e2f8da8f2528049f055263aecd2f8af"
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DOWNLOAD_x86_64=""
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DOWNLOAD_x86_64=""
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MD5SUM_x86_64=""
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MD5SUM_x86_64=""
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REQUIRES="jdk"
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REQUIRES="jdk"
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