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libraries/UMFPACK: Updated for version 5.6.2.

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Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
This commit is contained in:
Kyle Guinn 2013-12-30 20:07:46 -06:00 committed by Robby Workman
parent cdb3d6ec6d
commit fadc4225dd
4 changed files with 345 additions and 213 deletions
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26
libraries/UMFPACK/UMFPACK.SlackBuild
View file

@ -1,10 +1,29 @@
#!/bin/sh
# Slackware build script for UMFPACK
# Written by Kyle Guinn <elyk03@gmail.com>
# Copyright 2013 Kyle Guinn <elyk03@gmail.com>, USA
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
# permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=UMFPACK
VERSION=${VERSION:-5.5.1}
VERSION=${VERSION:-5.6.2}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@ -56,6 +75,7 @@ find -L . \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
patch -p1 < $CWD/autotoolize.diff
patch -p1 < $CWD/atlas-threaded-blas.diff
autoreconf -vif
CFLAGS="$SLKCFLAGS" \
@ -70,9 +90,11 @@ FFLAGS="$SLKCFLAGS" \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--enable-shared \
--disable-static \
--disable-dependency-tracking \
--build=$ARCH-slackware-linux
make
make check
make install-strip DESTDIR=$PKG
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION

10
libraries/UMFPACK/UMFPACK.info
View file

@ -1,10 +1,10 @@
PRGNAM="UMFPACK"
VERSION="5.5.1"
HOMEPAGE="http://www.cise.ufl.edu/research/sparse/umfpack/"
DOWNLOAD="http://www.cise.ufl.edu/research/sparse/umfpack/UMFPACK-5.5.1.tar.gz"
MD5SUM="cb13431ce9cf2b515d1f889f329f4558"
VERSION="5.6.2"
HOMEPAGE="https://www.cise.ufl.edu/research/sparse/umfpack/"
DOWNLOAD="https://www.cise.ufl.edu/research/sparse/umfpack/UMFPACK-5.6.2.tar.gz"
MD5SUM="8d16f73dd16216f0d2ebb54460ae10a0"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="CHOLMOD"
REQUIRES="blas SuiteSparse_config AMD CHOLMOD"
MAINTAINER="Kyle Guinn"
EMAIL="elyk03@gmail.com"

26
libraries/UMFPACK/atlas-threaded-blas.diff Normal file
View file

@ -0,0 +1,26 @@
diff --git a/ax_blas.m4 b/ax_blas.m4
--- a/ax_blas.m4
+++ b/ax_blas.m4
@@ -117,12 +117,16 @@
# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
if test $ax_blas_ok = no; then
AC_CHECK_LIB(atlas, ATL_xerbla,
- [AC_CHECK_LIB(f77blas, $sgemm,
- [AC_CHECK_LIB(cblas, cblas_dgemm,
- [ax_blas_ok=yes
- BLAS_LIBS="-lcblas -lf77blas -latlas"],
- [], [-lf77blas -latlas])],
- [], [-latlas])])
+ [AC_CHECK_LIB(ptf77blas, $sgemm,
+ [AC_CHECK_LIB(ptcblas, cblas_dgemm,
+ [ax_blas_ok=yes; BLAS_LIBS="-lptcblas -lptf77blas -latlas"],,
+ [-lptf77blas -latlas])],
+ [AC_CHECK_LIB(f77blas, $sgemm,
+ [AC_CHECK_LIB(cblas, cblas_dgemm,
+ [ax_blas_ok=yes; BLAS_LIBS="-lcblas -lf77blas -latlas"],,
+ [-lf77blas -latlas])],,
+ [-latlas])],
+ [-latlas])])
fi
# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)

496
libraries/UMFPACK/autotoolize.diff
View file

@ -3,7 +3,7 @@ new file mode 100644
--- /dev/null
+++ b/Demo/Makefile.am
@@ -0,0 +1,152 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(AMD_CFLAGS) $(UFCONFIG_CFLAGS)
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(AMD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
+LDADD = $(top_builddir)/Source/libumfpack.la
+
+EXTRA_DIST = \
@ -113,53 +113,53 @@ new file mode 100644
+libumf4_f77wrapper64_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
+
+libumf4_f77zwrapper64_la_SOURCES = umf4_f77zwrapper.c
+libumf4_f77zwrapper64_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
+libumf4_f77zwrapper64_la_CPPFLAGS = $(AM_CPPFLAGS) -DZLONG
+
+check-local: $(SIMPLE) $(DEMO) $(DEMO:=.out) $(READHB) $(HB) $(UMF4) $(UMF4HB) $(UMF4HB:=.out)
+ ./umfpack_simple
+ ./umfpack_di_demo > my_umfpack_di_demo.out
+ -diff -u umfpack_di_demo.out my_umfpack_di_demo.out
+ -diff -u $(srcdir)/umfpack_di_demo.out my_umfpack_di_demo.out
+ ./umfpack_dl_demo > my_umfpack_dl_demo.out
+ -diff -u umfpack_dl_demo.out my_umfpack_dl_demo.out
+ -diff -u $(srcdir)/umfpack_dl_demo.out my_umfpack_dl_demo.out
+ ./umfpack_zi_demo > my_umfpack_zi_demo.out
+ -diff -u umfpack_zi_demo.out my_umfpack_zi_demo.out
+ -diff -u $(srcdir)/umfpack_zi_demo.out my_umfpack_zi_demo.out
+ ./umfpack_zl_demo > my_umfpack_zl_demo.out
+ -diff -u umfpack_zl_demo.out my_umfpack_zl_demo.out
+ -./readhb_nozeros < HB/can_24.psa > tmp/A
+ -./readhb_size < HB/can_24.psa > tmp/Asize
+ -diff -u $(srcdir)/umfpack_zl_demo.out my_umfpack_zl_demo.out
+ -$(MKDIR_P) tmp
+ -./readhb_nozeros < $(srcdir)/HB/can_24.psa > tmp/A
+ -./readhb_size < $(srcdir)/HB/can_24.psa > tmp/Asize
+ -./umf4
+ -./readhb_nozeros < HB/west0067.rua > tmp/A
+ -./readhb_size < HB/west0067.rua > tmp/Asize
+ -./readhb_nozeros < $(srcdir)/HB/west0067.rua > tmp/A
+ -./readhb_size < $(srcdir)/HB/west0067.rua > tmp/Asize
+ -./umf4
+ -./readhb_nozeros < HB/fs_183_6.rua > tmp/A
+ -./readhb_size < HB/fs_183_6.rua > tmp/Asize
+ -./readhb_nozeros < $(srcdir)/HB/fs_183_6.rua > tmp/A
+ -./readhb_size < $(srcdir)/HB/fs_183_6.rua > tmp/Asize
+ -./umf4
+ -./readhb < HB/fs_183_6.rua > tmp/A
+ -./readhb_size < HB/fs_183_6.rua > tmp/Asize
+ -./readhb < $(srcdir)/HB/fs_183_6.rua > tmp/A
+ -./readhb_size < $(srcdir)/HB/fs_183_6.rua > tmp/Asize
+ -./umf4
+ -./readhb < HB/arc130.rua > tmp/A
+ -./readhb_size < HB/arc130.rua > tmp/Asize
+ -./readhb < $(srcdir)/HB/arc130.rua > tmp/A
+ -./readhb_size < $(srcdir)/HB/arc130.rua > tmp/Asize
+ -./umf4
+ -./readhb_nozeros < HB/arc130.rua > tmp/A
+ -./readhb_size < HB/arc130.rua > tmp/Asize
+ -./readhb_nozeros < $(srcdir)/HB/arc130.rua > tmp/A
+ -./readhb_size < $(srcdir)/HB/arc130.rua > tmp/Asize
+ -./umf4
+ -./readhb_nozeros < HB/arc130.rua > tmp/A
+ -./readhb_size < HB/arc130.rua > tmp/Asize
+ -./readhb_nozeros < $(srcdir)/HB/arc130.rua > tmp/A
+ -./readhb_size < $(srcdir)/HB/arc130.rua > tmp/Asize
+ -./umf4 a 1e-6
+ -./umf4hb < HB/west0067.rua > my_umf4hb.out
+ -diff -u umf4hb.out my_umf4hb.out
+ -./umf4zhb < HB/qc324.cua > my_umf4zhb.out
+ -diff -u umf4zhb.out my_umf4zhb.out
+ -./umf4hb64 < HB/west0067.rua > my_umf4hb64.out
+ -diff -u umf4hb64.out my_umf4hb64.out
+ -./umf4hb < $(srcdir)/HB/west0067.rua > my_umf4hb.out
+ -diff -u $(srcdir)/umf4hb.out my_umf4hb.out
+ -./umf4zhb < $(srcdir)/HB/qc324.cua > my_umf4zhb.out
+ -diff -u $(srcdir)/umf4zhb.out my_umf4zhb.out
+ -./umf4hb64 < $(srcdir)/HB/west0067.rua > my_umf4hb64.out
+ -diff -u $(srcdir)/umf4hb64.out my_umf4hb64.out
+
+clean-local:
+ -$(RM) my_*.out
+CLEANFILES = my_*.out *.umf tmp/* tmp
diff --git a/Doc/Makefile.am b/Doc/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Doc/Makefile.am
@@ -0,0 +1,66 @@
@@ -0,0 +1,97 @@
+EXTRA_DIST = \
+ ChangeLog \
+ License \
@ -172,66 +172,96 @@ new file mode 100644
+ UserGuide.sed2 \
+ UserGuide.stex
+
+pdf_DATA = \
+dist_pdf_DATA = \
+ QuickStart.pdf \
+ UserGuide.pdf
+
+# Unlike UserGuide.sed1, use \input{filename.tex} to insert the source code
+# which we will construct below. Also remove the \begin{verbatim} and
+# \end{verbatim} on the adjacent lines and add them to filename.tex.
+define sed1 =
+sed -e ':more;$$!N;s/\n/&/2;t enough;$$!b more;:enough;/^\\begin{verbatim}\nINCLUDE umfpack\(.*\)\.\([ch]\) via sed\n\\end{verbatim}$$/s//\\input{\1_\2.tex}/;P;D' $< > $@
+endef
+
+# UserGuide.sed2 currently strips out C-style comments. In some cases it
+# strips out too much due to formatting; we'll leave that for upstream to fix.
+define sed2 =
+echo '\begin{verbatim}' > $@
+sed -e '/[/][*]/d' -e '/[*][/]/d' < $< | expand -8 >> $@
+echo '\end{verbatim}' >> $@
+endef
+
+UserGuide.tex: $(srcdir)/UserGuide.stex
+ $(sed1)
+
+_simple_c.tex: $(top_srcdir)/Demo/umfpack_simple.c
+ $(sed2)
+%_h.tex: $(top_srcdir)/Include/umfpack%.h
+ $(sed2)
+
+SRC = \
+ ../Demo/umfpack_simple.c \
+ ../Include/umfpack_col_to_triplet.h \
+ ../Include/umfpack_defaults.h \
+ ../Include/umfpack_free_numeric.h \
+ ../Include/umfpack_free_symbolic.h \
+ ../Include/umfpack_get_determinant.h \
+ ../Include/umfpack_get_lunz.h \
+ ../Include/umfpack_get_numeric.h \
+ ../Include/umfpack_get_symbolic.h \
+ ../Include/umfpack_load_numeric.h \
+ ../Include/umfpack_load_symbolic.h \
+ ../Include/umfpack_numeric.h \
+ ../Include/umfpack_qsymbolic.h \
+ ../Include/umfpack_report_control.h \
+ ../Include/umfpack_report_info.h \
+ ../Include/umfpack_report_matrix.h \
+ ../Include/umfpack_report_numeric.h \
+ ../Include/umfpack_report_perm.h \
+ ../Include/umfpack_report_status.h \
+ ../Include/umfpack_report_symbolic.h \
+ ../Include/umfpack_report_triplet.h \
+ ../Include/umfpack_report_vector.h \
+ ../Include/umfpack_save_numeric.h \
+ ../Include/umfpack_save_symbolic.h \
+ ../Include/umfpack_scale.h \
+ ../Include/umfpack_solve.h \
+ ../Include/umfpack_symbolic.h \
+ ../Include/umfpack_tictoc.h \
+ ../Include/umfpack_timer.h \
+ ../Include/umfpack_transpose.h \
+ ../Include/umfpack_triplet_to_col.h \
+ ../Include/umfpack_wsolve.h
+ _simple_c.tex \
+ _col_to_triplet_h.tex \
+ _defaults_h.tex \
+ _free_numeric_h.tex \
+ _free_symbolic_h.tex \
+ _get_determinant_h.tex \
+ _get_lunz_h.tex \
+ _get_numeric_h.tex \
+ _get_symbolic_h.tex \
+ _load_numeric_h.tex \
+ _load_symbolic_h.tex \
+ _numeric_h.tex \
+ _qsymbolic_h.tex \
+ _report_control_h.tex \
+ _report_info_h.tex \
+ _report_matrix_h.tex \
+ _report_numeric_h.tex \
+ _report_perm_h.tex \
+ _report_status_h.tex \
+ _report_symbolic_h.tex \
+ _report_triplet_h.tex \
+ _report_vector_h.tex \
+ _save_numeric_h.tex \
+ _save_symbolic_h.tex \
+ _scale_h.tex \
+ _solve_h.tex \
+ _symbolic_h.tex \
+ _tictoc_h.tex \
+ _timer_h.tex \
+ _transpose_h.tex \
+ _triplet_to_col_h.tex \
+ _wsolve_h.tex
+
+UserGuide.tex: UserGuide.stex UserGuide.sed1 UserGuide.sed2 $(SRC)
+ sed -f UserGuide.sed1 < UserGuide.stex | sed -f UserGuide.sed2 | expand -8 > $@
+.INTERMEDIATE: UserGuide.tex $(SRC)
+UserGuide.tex: $(SRC)
+
+%.pdf: %.tex %.bib
+ pdflatex $*
+ bibtex $*
+ pdflatex $*
+ pdflatex $*
+TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error
+BIB = BIBINPUTS="$(srcdir):" bibtex
+%.pdf: %.tex %.bbl
+ $(TEX) $*
+ while grep -q "Rerun to get cross-references right" $*.log; do \
+ $(TEX) $*; \
+ done
+%.bbl: %.aux %.bib
+ $(BIB) $*
+%.aux: %.tex
+ $(TEX) $*
+
+%.pdf: %.tex
+ pdflatex $*
+ pdflatex $*
+# QuickStart does not include a bibliography, so the above rule won't work.
+QuickStart.pdf: %.pdf: %.tex
+ $(TEX) $*
+ while grep -q "Rerun to get cross-references right" $*.log; do \
+ $(TEX) $*; \
+ done
+
+clean-local:
+ -$(RM) *.aux *.bbl *.blg *.log *.toc
+ -$(RM) UserGuide.tex
+CLEANFILES = *.aux *.bbl *.blg *.log *.toc UserGuide.tex
+MAINTAINERCLEANFILES = $(dist_pdf_DATA)
diff --git a/Include/Makefile.am b/Include/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Include/Makefile.am
@@ -0,0 +1,35 @@
+pkgincludedir = $(includedir)/umfpack
@@ -0,0 +1,34 @@
+pkginclude_HEADERS = \
+ umfpack.h \
+ umfpack_col_to_triplet.h \
@ -280,9 +310,8 @@ diff --git a/Source/Makefile.am b/Source/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Source/Makefile.am
@@ -0,0 +1,315 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(AMD_CFLAGS) $(UFCONFIG_CFLAGS)
+AM_CPPFLAGS += $(UMFPACK_NCHOLMOD)
@@ -0,0 +1,318 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(AMD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
+
+# non-user-callable umf_*.[ch] files:
+UMF = \
@ -325,7 +354,7 @@ new file mode 100644
+ umf_valid_symbolic.c
+
+# non-user-callable umf_*.[ch] files
+# int/UF_long versions only (no real/complex):
+# int/SuiteSparse_long versions only (no real/complex):
+UMFINT = \
+ umf_analyze.c \
+ umf_apply_order.c \
@ -340,7 +369,7 @@ new file mode 100644
+ umf_singletons.c
+
+# user-callable umfpack_*.c files
+# (int/UF_long and real/complex):
+# (int/SuiteSparse_long and real/complex):
+UMFPACK = \
+ umfpack_col_to_triplet.c \
+ umfpack_defaults.c \
@ -372,7 +401,7 @@ new file mode 100644
+ umfpack_triplet_to_col.c
+
+# user-callable umfpack_*.c files
+# only one version for int/UF_long, real/complex:
+# only one version for int/SuiteSparse_long, real/complex:
+GENERIC = \
+ umfpack_timer.c \
+ umfpack_tictoc.c \
@ -426,13 +455,21 @@ new file mode 100644
+ libumfpack_zl_wsolve.la \
+ libumfpack_zl.la
+
+# compile each int and UF_long routine (with no real/complex version)
+# compile each int and SuiteSparse_long routine (with no real/complex version)
+libumf_i_la_SOURCES = $(UMFINT)
+libumf_i_la_CPPFLAGS = $(AM_CPPFLAGS) -DDINT
+
+libumf_l_la_SOURCES = $(UMFINT)
+libumf_l_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
+
+if CHOLMOD
+libumf_i_la_LIBADD = $(CHOLMOD_LIBS)
+libumf_l_la_LIBADD = $(CHOLMOD_LIBS)
+else
+libumf_i_la_CPPFLAGS += -DNCHOLMOD
+libumf_l_la_CPPFLAGS += -DNCHOLMOD
+endif
+
+# compile each routine in the DI version
+libumf_di_hsolve_la_SOURCES = umf_ltsolve.c umf_utsolve.c
+libumf_di_hsolve_la_CPPFLAGS = $(AM_CPPFLAGS) -DDINT -DCONJUGATE_SOLVE
@ -589,102 +626,93 @@ new file mode 100644
+ libumf_di.la libumfpack_di.la \
+ libumf_dl.la libumfpack_dl.la \
+ libumf_zi.la libumfpack_zi.la \
+ libumf_zl.la libumfpack_zl.la
+
+if CHOLMOD
+libumfpack_la_LIBADD += $(CHOLMOD_LIBS)
+endif
+libumfpack_la_LIBADD += $(AMD_LIBS) $(BLAS_LIBS) -lm
+libumfpack_la_LDFLAGS = -no-undefined -version-info 10:1:5
diff --git a/acx_blas.m4 b/acx_blas.m4
+ libumf_zl.la libumfpack_zl.la \
+ $(AMD_LIBS) $(SUITESPARSECONFIG_LIBS) $(BLAS_LIBS) -lm
+libumfpack_la_LDFLAGS = -no-undefined -version-number 5:6:2
diff --git a/ax_blas.m4 b/ax_blas.m4
new file mode 100644
--- /dev/null
+++ b/acx_blas.m4
@@ -0,0 +1,191 @@
+##### http://autoconf-archive.cryp.to/acx_blas.html
+++ b/ax_blas.m4
@@ -0,0 +1,238 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_blas.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# ACX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
+# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
+#
+# DESCRIPTION
+#
+# This macro looks for a library that implements the BLAS
+# linear-algebra interface (see http://www.netlib.org/blas/). On
+# success, it sets the BLAS_LIBS output variable to hold the
+# requisite library linkages.
+# This macro looks for a library that implements the BLAS linear-algebra
+# interface (see http://www.netlib.org/blas/). On success, it sets the
+# BLAS_LIBS output variable to hold the requisite library linkages.
+#
+# To link with BLAS, you should link with:
+#
+# $BLAS_LIBS $LIBS $FLIBS
+# $BLAS_LIBS $LIBS $FLIBS
+#
+# in that order. FLIBS is the output variable of the
+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by ACX_BLAS), and
+# is sometimes necessary in order to link with F77 libraries. Users
+# will also need to use AC_F77_DUMMY_MAIN (see the autoconf manual),
+# for the same reason.
+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
+# sometimes necessary in order to link with F77 libraries. Users will also
+# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
+# reason.
+#
+# Many libraries are searched for, from ATLAS to CXML to ESSL. The
+# user may also use --with-blas=<lib> in order to use some specific
+# BLAS library <lib>. In order to link successfully, however, be
+# aware that you will probably need to use the same Fortran compiler
+# (which can be set via the F77 env. var.) as was used to compile the
+# BLAS library.
+# Many libraries are searched for, from ATLAS to CXML to ESSL. The user
+# may also use --with-blas=<lib> in order to use some specific BLAS
+# library <lib>. In order to link successfully, however, be aware that you
+# will probably need to use the same Fortran compiler (which can be set
+# via the F77 env. var.) as was used to compile the BLAS library.
+#
+# ACTION-IF-FOUND is a list of shell commands to run if a BLAS
+# library is found, and ACTION-IF-NOT-FOUND is a list of commands to
+# run it if it is not found. If ACTION-IF-FOUND is not specified, the
+# default action will define HAVE_BLAS.
+# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is
+# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is
+# not found. If ACTION-IF-FOUND is not specified, the default action will
+# define HAVE_BLAS.
+#
+# This macro requires autoconf 2.50 or later.
+# LICENSE
+#
+# LAST MODIFICATION
+# Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
+#
+# 2007-07-29
+#
+# COPYLEFT
+#
+# Copyright (c) 2007 Steven G. Johnson <stevenj@alum.mit.edu>
+#
+# This program is free software: you can redistribute it and/or
+# modify it under the terms of the GNU General Public License as
+# published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation, either version 3 of the License, or (at your
+# option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# General Public License for more details.
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
+# Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see
+# <http://www.gnu.org/licenses/>.
+# You should have received a copy of the GNU General Public License along
+# with this program. If not, see <http://www.gnu.org/licenses/>.
+#
+# As a special exception, the respective Autoconf Macro's copyright
+# owner gives unlimited permission to copy, distribute and modify the
+# configure scripts that are the output of Autoconf when processing
+# the Macro. You need not follow the terms of the GNU General Public
+# License when using or distributing such scripts, even though
+# portions of the text of the Macro appear in them. The GNU General
+# Public License (GPL) does govern all other use of the material that
+# constitutes the Autoconf Macro.
+# As a special exception, the respective Autoconf Macro's copyright owner
+# gives unlimited permission to copy, distribute and modify the configure
+# scripts that are the output of Autoconf when processing the Macro. You
+# need not follow the terms of the GNU General Public License when using
+# or distributing such scripts, even though portions of the text of the
+# Macro appear in them. The GNU General Public License (GPL) does govern
+# all other use of the material that constitutes the Autoconf Macro.
+#
+# This special exception to the GPL applies to versions of the
+# Autoconf Macro released by the Autoconf Macro Archive. When you
+# make and distribute a modified version of the Autoconf Macro, you
+# may extend this special exception to the GPL to apply to your
+# modified version as well.
+# This special exception to the GPL applies to versions of the Autoconf
+# Macro released by the Autoconf Archive. When you make and distribute a
+# modified version of the Autoconf Macro, you may extend this special
+# exception to the GPL to apply to your modified version as well.
+
+AC_DEFUN([ACX_BLAS], [
+#serial 14
+
+AU_ALIAS([ACX_BLAS], [AX_BLAS])
+AC_DEFUN([AX_BLAS], [
+AC_PREREQ(2.50)
+AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
+acx_blas_ok=no
+AC_REQUIRE([AC_CANONICAL_HOST])
+ax_blas_ok=no
+
+AC_ARG_WITH(blas,
+ [AC_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
+ [AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
+case $with_blas in
+ yes | "") ;;
+ no) acx_blas_ok=disable ;;
+ no) ax_blas_ok=disable ;;
+ -* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
+ *) BLAS_LIBS="-l$with_blas" ;;
+esac
@ -693,117 +721,173 @@ new file mode 100644
+AC_F77_FUNC(sgemm)
+AC_F77_FUNC(dgemm)
+
+acx_blas_save_LIBS="$LIBS"
+ax_blas_save_LIBS="$LIBS"
+LIBS="$LIBS $FLIBS"
+
+# First, check BLAS_LIBS environment variable
+if test $acx_blas_ok = no; then
+if test $ax_blas_ok = no; then
+if test "x$BLAS_LIBS" != x; then
+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
+ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
+ AC_TRY_LINK_FUNC($sgemm, [acx_blas_ok=yes], [BLAS_LIBS=""])
+ AC_MSG_RESULT($acx_blas_ok)
+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
+fi
+
+# BLAS linked to by default? (happens on some supercomputers)
+if test $acx_blas_ok = no; then
+if test $ax_blas_ok = no; then
+ save_LIBS="$LIBS"; LIBS="$LIBS"
+ AC_CHECK_FUNC($sgemm, [acx_blas_ok=yes])
+ AC_MSG_CHECKING([if $sgemm is being linked in already])
+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
+
+# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes
+ BLAS_LIBS="-lopenblas"])
+fi
+
+# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
+if test $acx_blas_ok = no; then
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(atlas, ATL_xerbla,
+ [AC_CHECK_LIB(f77blas, $sgemm,
+ [AC_CHECK_LIB(cblas, cblas_dgemm,
+ [acx_blas_ok=yes
+ [ax_blas_ok=yes
+ BLAS_LIBS="-lcblas -lf77blas -latlas"],
+ [], [-lf77blas -latlas])],
+ [], [-latlas])])
+fi
+
+# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
+if test $acx_blas_ok = no; then
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm,
+ [AC_CHECK_LIB(dgemm, $dgemm,
+ [AC_CHECK_LIB(sgemm, $sgemm,
+ [acx_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
+ [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
+ [], [-lblas])],
+ [], [-lblas])])
+fi
+
+# BLAS in Intel MKL library?
+if test $ax_blas_ok = no; then
+ # MKL for gfortran
+ if test x"$ac_cv_fc_compiler_gnu" = xyes; then
+ # 64 bit
+ if test $host_cpu = x86_64; then
+ AC_CHECK_LIB(mkl_gf_lp64, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread])
+ # 32 bit
+ elif test $host_cpu = i686; then
+ AC_CHECK_LIB(mkl_gf, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_gf -lmkl_sequential -lmkl_core -lpthread])
+ fi
+ # MKL for other compilers (Intel, PGI, ...?)
+ else
+ # 64-bit
+ if test $host_cpu = x86_64; then
+ AC_CHECK_LIB(mkl_intel_lp64, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread])
+ # 32-bit
+ elif test $host_cpu = i686; then
+ AC_CHECK_LIB(mkl_intel, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_intel -lmkl_sequential -lmkl_core -lpthread])
+ fi
+ fi
+fi
+# Old versions of MKL
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread])
+fi
+
+# BLAS in Apple vecLib library?
+if test $ax_blas_ok = no; then
+ save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS"
+ AC_MSG_CHECKING([for $sgemm in -framework vecLib])
+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
+
+# BLAS in Alpha CXML library?
+if test $acx_blas_ok = no; then
+ AC_CHECK_LIB(cxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-lcxml"])
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"])
+fi
+
+# BLAS in Alpha DXML library? (now called CXML, see above)
+if test $acx_blas_ok = no; then
+ AC_CHECK_LIB(dxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-ldxml"])
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"])
+fi
+
+# BLAS in Sun Performance library?
+if test $acx_blas_ok = no; then
+if test $ax_blas_ok = no; then
+ if test "x$GCC" != xyes; then # only works with Sun CC
+ AC_CHECK_LIB(sunmath, acosp,
+ [AC_CHECK_LIB(sunperf, $sgemm,
+ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
+ acx_blas_ok=yes],[],[-lsunmath])])
+ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
+ ax_blas_ok=yes],[],[-lsunmath])])
+ fi
+fi
+
+# BLAS in SCSL library? (SGI/Cray Scientific Library)
+if test $acx_blas_ok = no; then
+ AC_CHECK_LIB(scs, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lscs"])
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"])
+fi
+
+# BLAS in SGIMATH library?
+if test $acx_blas_ok = no; then
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(complib.sgimath, $sgemm,
+ [acx_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
+ [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
+fi
+
+# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
+if test $acx_blas_ok = no; then
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm,
+ [AC_CHECK_LIB(essl, $sgemm,
+ [acx_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
+ [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
+ [], [-lblas $FLIBS])])
+fi
+
+# Generic BLAS library?
+if test $acx_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lblas"])
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"])
+fi
+
+AC_SUBST(BLAS_LIBS)
+
+LIBS="$acx_blas_save_LIBS"
+LIBS="$ax_blas_save_LIBS"
+
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
+if test x"$acx_blas_ok" = xyes; then
+if test x"$ax_blas_ok" = xyes; then
+ ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
+ :
+else
+ acx_blas_ok=no
+ ax_blas_ok=no
+ $2
+fi
+])dnl ACX_BLAS
+])dnl AX_BLAS
diff --git a/configure.ac b/configure.ac
new file mode 100644
--- /dev/null
+++ b/configure.ac
@@ -0,0 +1,72 @@
+AC_PREREQ([2.68])
+AC_INIT([UMFPACK],[5.5.1],[davis@cise.ufl.edu])
@@ -0,0 +1,75 @@
+# -*- Autoconf -*-
+# Process this file with autoconf to produce a configure script.
+
+AC_PREREQ([2.69])
+AC_INIT([UMFPACK],[5.6.2],[DrTimothyAldenDavis@gmail.com],[umfpack],[http://www.suitesparse.com/])
+AC_CONFIG_SRCDIR([Source/umfpack_global.c])
+AC_CONFIG_HEADER([config.h])
+AC_CONFIG_HEADERS([config.h])
+AM_INIT_AUTOMAKE([foreign])
+LT_INIT
+
+# Checks for programs.
+AC_PROG_INSTALL
+AC_PROG_CC
+AC_PROG_F77
@ -811,53 +895,52 @@ new file mode 100644
+AC_MSG_CHECKING([whether to use cholmod])
+AC_ARG_WITH([cholmod],
+ [AS_HELP_STRING(
+ [--with-cholmod],
+ [Use CHOLMOD for ordering methods @<:@default=yes@:>@])],
+ [with_cholmod=$withval],
+ [with_cholmod="yes"])
+AC_MSG_RESULT([$with_cholmod])
+
+if test "x$with_cholmod" = "xno"; then
+ AC_DEFINE([NCHOLMOD], [], [Define to disable CHOLMOD])
+ AC_SUBST([UMFPACK_NCHOLMOD], ["-DNCHOLMOD"])
+fi
+ [--without-cholmod],
+ [do not use CHOLMOD for ordering methods])],
+ [cholmod=$withval],
+ [cholmod="yes"])
+AC_MSG_RESULT([$cholmod])
+
+LIBS_SAVED=$LIBS
+
+# Checks for libraries.
+AC_CHECK_LIB([m], [sqrt])
+
+AC_CHECK_HEADERS([float.h stdlib.h string.h sys/time.h unistd.h])
+sinclude(ax_blas.m4)
+AX_BLAS
+if test "x$ax_blas_ok" != "xyes"; then
+ AC_MSG_ERROR([cannot find blas])
+fi
+
+PKG_PROG_PKG_CONFIG
+PKG_CHECK_MODULES([UFCONFIG],[ufconfig],
+PKG_CHECK_MODULES([SUITESPARSECONFIG],[suitesparseconfig],
+ [],
+ [AC_MSG_ERROR([cannot find ufconfig])])
+ [AC_MSG_ERROR([cannot find suitesparseconfig])])
+PKG_CHECK_MODULES([AMD],[amd],
+ [],
+ [AC_MSG_ERROR([cannot find amd])])
+UMFPACK_REQUIRES="ufconfig amd"
+UMFPACK_REQUIRES="suitesparseconfig amd"
+
+sinclude(acx_blas.m4)
+ACX_BLAS
+if test "x$BLAS_LIBS" = "x"; then
+ AC_MSG_ERROR([cannot find blas libraries])
+fi
+
+if test "x$with_cholmod" = "xyes"; then
+if test "x$cholmod" = "xyes"; then
+ PKG_CHECK_MODULES([CHOLMOD],[cholmod],
+ [UMFPACK_REQUIRES="$UMFPACK_REQUIRES cholmod"],
+ [AC_MSG_ERROR([cannot find cholmod])])
+fi
+
+# Checks for header files.
+AC_CHECK_HEADERS([float.h stdlib.h string.h])
+
+# Checks for typedefs, structures, and compiler characteristics.
+AC_TYPE_SIZE_T
+
+# Checks for library functions.
+AC_FUNC_ERROR_AT_LINE
+AC_FUNC_MALLOC
+AC_CHECK_FUNCS([clock_gettime pow sqrt])
+AC_CHECK_FUNCS([pow sqrt])
+
+LIBS=$LIBS_SAVED
+
+AM_CONDITIONAL([CHOLMOD], [test "x$with_cholmod" = "xyes"])
+AM_CONDITIONAL([CHOLMOD], [test "x$cholmod" = "xyes"])
+
+AC_SUBST([UMFPACK_REQUIRES])
+
@ -873,7 +956,7 @@ diff --git a/umfpack.pc.in b/umfpack.pc.in
new file mode 100644
--- /dev/null
+++ b/umfpack.pc.in
@@ -0,0 +1,12 @@
@@ -0,0 +1,13 @@
+prefix=@prefix@
+exec_prefix=@exec_prefix@
+libdir=@libdir@
@ -882,6 +965,7 @@ new file mode 100644
+Name: @PACKAGE_NAME@
+Description: Sparse multifrontal LU factorization
+Version: @PACKAGE_VERSION@
+URL: @PACKAGE_URL@
+Requires.private: @UMFPACK_REQUIRES@
+Libs: -L${libdir} -lumfpack
+Libs.private: @BLAS_LIBS@ -lm