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academic/snpEff: Updated for version 4.3k.

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Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
This commit is contained in:
Petar Petrov 2017-04-16 22:13:59 +01:00 committed by Willy Sudiarto Raharjo
parent 6f7181339b
commit ef36be56b8
4 changed files with 9 additions and 9 deletions
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4
academic/snpEff/README
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@ -14,11 +14,11 @@ acid changes).
This also installs SnpSift, a toolbox that allows you to filter and
manipulate annotated files. Once your genomic variants have been
annotated, you need to filter them out in order to find the
annotated, you need to filter them out in order to find the
"interesting / relevant variants". Given the large data files, this is
not a trivial task (e.g. you cannot load all the variants into XLS
spreadsheet). SnpSift helps to perform this VCF file manipulation and
filtering required at this stage in data processing pipelines.
filtering required at this stage in data processing pipelines.
If you are using SnpEff or SnpSift, please cite:
A program for annotating and predicting the effects of single

2
academic/snpEff/slack-desc
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@ -13,7 +13,7 @@ snpEff: annotates and predicts the effects of variants on genes (such
snpEff: as amino acid changes).
snpEff:
snpEff: Home: http://snpeff.sourceforge.net/
snpEff: References: /usr/doc/snpEff-4.2/References
snpEff: References: /usr/doc/snpEff-4.3k/References
snpEff:
snpEff:
snpEff:

6
academic/snpEff/snpEff.SlackBuild
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@ -2,7 +2,7 @@
# Slackware build script for snpEff
# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com
# Copyright 2015-2017 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,8 +23,8 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=snpEff
VERSION=${VERSION:-4.2}
SRCVER=${SRCVER:-v4_2}
VERSION=${VERSION:-4.3k}
SRCVER=${SRCVER:-v4_3k}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}

6
academic/snpEff/snpEff.info
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@ -1,8 +1,8 @@
PRGNAM="snpEff"
VERSION="4.2"
VERSION="4.3k"
HOMEPAGE="http://snpeff.sourceforge.net/"
DOWNLOAD="http://sourceforge.net/projects/snpeff/files/snpEff_v4_2_core.zip"
MD5SUM="25ae5b062d57072de6cfb8677ca3625a"
DOWNLOAD="https://sourceforge.net/projects/snpeff/files/snpEff_v4_3k_core.zip"
MD5SUM="2533b329c734a678780cf045ba6b4a48"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"