Miroirs/slackbuilds_ponce
1
0
Fork 0
mirror of https://github.com/Ponce/slackbuilds synced 2024-10-01 06:32:51 +02:00
Code Issues Projects Releases Packages Wiki Activity Actions

academic/paml: Updated for version 4.8.

Browse source 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Petar Petrov 2014-04-09 17:10:19 +07:00 committed by Willy Sudiarto Raharjo
parent 1ee8b013c5
commit d7885d5681
3 changed files with 11 additions and 9 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

10
academic/paml/paml.SlackBuild
View file

@ -2,7 +2,7 @@
# Slackware build script for paml
# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=paml
VERSION=${VERSION:-4.7a}
VERSION=${VERSION:-4.8}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@ -92,7 +92,7 @@ install -D -m755 yn00 $PKG/usr/bin/yn00
cc $SLKCFLAGS -DCodonNSbranches -o evolverNSbranches evolver.c tools.c -lm
cc $SLKCFLAGS -DCodonNSsites -o evolverNSsites evolver.c tools.c -lm
cc $SLKCFLAGS -DCodonNSbranchsites -o evolverNSbranchsites evolver.c tools.c -lm
install -D -m755 evolverNSbranches $PKG/usr/libexec/$PRGNAM/evolverNSbranches
install -D -m755 evolverNSbranchsites $PKG/usr/libexec/$PRGNAM/evolverNSbranchsites
install -D -m755 evolverNSsites $PKG/usr/libexec/$PRGNAM/evolverNSsites
@ -140,10 +140,10 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \
README.txt GeneticCode.txt doc/* src/README-compiling.txt \
cp -a README.txt GeneticCode.txt doc/* src/README-compiling.txt \
Technical/{Pt/eigenQREV.pdf,Simulation/{multiruns.txt,Codon/README-codon.txt}}\
$PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/MCMCtree.Tutorials.pdf > $PKG/usr/doc/$PRGNAM-$VERSION/MCMCtree.Tutorial.pdf
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
cat $CWD/LICENSE > $PKG/usr/doc/$PRGNAM-$VERSION/LICENSE

8
academic/paml/paml.info
View file

@ -1,8 +1,10 @@
PRGNAM="paml"
VERSION="4.7a"
VERSION="4.8"
HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.7a.tgz"
MD5SUM="59b330e6ba15b1e79a02ff3817b96346"
DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8.tgz \
http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf"
MD5SUM="927b69551068e044bad2a0e133d8ace7 \
29c851d887eea56b949c01ab42cc48fb"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""

2
academic/paml/slack-desc
View file

@ -16,4 +16,4 @@ paml: reconstructed trees using other programs such as PAUP*, PHYLIP,
paml: MOLPHY, PhyML, RaxML, etc.
paml:
paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html
paml: References: /usr/doc/paml-4.7a/References
paml: References: /usr/doc/paml-4.8/References