academic/paml: Updated for version 4.8a.

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

academic/paml/README

@@ -10,7 +10,6 @@ Notes about running of PAML programs and the package:
 
 - Example datasets are included in /usr/share/paml/examples
 - Control files for PAML programs are in /usr/share/paml
-- Dcumentation can be found in /usr/doc/paml-$VERSION
 - Additional executables are placed in /usr/libexec/paml
 
 Suggested citation:

academic/paml/paml.SlackBuild

@@ -23,7 +23,7 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=paml
-VERSION=${VERSION:-4.8}
+VERSION=${VERSION:-4.8a}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
@@ -35,6 +35,8 @@ if [ -z "$ARCH" ]; then
   esac
 fi
 
+MAINVER=4.8
+
 CWD=$(pwd)
 TMP=${TMP:-/tmp/SBo}
 PKG=$TMP/package-$PRGNAM
@@ -61,7 +63,7 @@ mkdir -p $TMP $PKG $OUTPUT
 cd $TMP
 rm -rf ${PRGNAM}${VERSION}
 tar xvf $CWD/${PRGNAM}${VERSION}.tgz
-cd ${PRGNAM}${VERSION}
+cd ${PRGNAM}${MAINVER}
 chown -R root:root .
 find -L . \
  \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
@@ -122,7 +124,7 @@ cd ..
 cc -o multiruns $SLKCFLAGS multiruns.c -lm
 install -D -m755 multiruns 	$PKG/usr/libexec/$PRGNAM/multiruns
 
-cd $TMP/${PRGNAM}${VERSION}
+cd $TMP/${PRGNAM}${MAINVER}
 
 # Include sample system files and example experimental data.
 mkdir -p $PKG/usr/share/$PRGNAM/{aa,codon,ctl,dat,nuc,paup,trees}

academic/paml/paml.info

@@ -1,9 +1,9 @@
 PRGNAM="paml"
-VERSION="4.8"
+VERSION="4.8a"
 HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
-DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8.tgz \
+DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8a.tgz \
 	http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf"
-MD5SUM="b99f10ba64da7889f35b68a3dfc99daf \
+MD5SUM="1da1f6c3861b45451cf130961d4bd3e3 \
 	29c851d887eea56b949c01ab42cc48fb"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""

academic/paml/slack-desc

@@ -16,4 +16,4 @@ paml: reconstructed trees using other programs such as PAUP*, PHYLIP,
 paml: MOLPHY, PhyML, RaxML, etc. 
 paml:
 paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html
-paml: References: /usr/doc/paml-4.8/References
+paml: References: /usr/doc/paml-4.8a/References