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academic/fastqc: Updated for version 0.11.8 + new maintainer.

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Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Rob van Nues 2018-12-22 00:03:06 -09:00 committed by Willy Sudiarto Raharjo
parent 1d24d96bc2
commit c438969e42
3 changed files with 18 additions and 10 deletions
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5
academic/fastqc/doinst.sh
View file

@ -1,3 +1,8 @@
if [ -x /usr/bin/update-desktop-database ]; then if [ -x /usr/bin/update-desktop-database ]; then
/usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1 /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
fi fi
( cd usr/bin ; rm -rf fastqc )
( cd usr/bin ; ln -sf ../share/java/fastqc/fastqc fastqc )
( cd usr/doc/fastqc-0.11.8 ; rm -rf Help )
( cd usr/doc/fastqc-0.11.8 ; ln -sf ../../share/java/fastqc/Help Help )

13
academic/fastqc/fastqc.SlackBuild
View file

@ -2,7 +2,7 @@
# Slackware build script for fastqc # Slackware build script for fastqc
# Copyright 2015-2018 Petar Petrov slackalaxy@gmail.com # Copyright 2015-2018 Petar Petrov slackalaxy@gmail.com; 2018 Rob van Nues sborg63.org
# All rights reserved. # All rights reserved.
# #
# Redistribution and use of this script, with or without modification, is # Redistribution and use of this script, with or without modification, is
@ -24,8 +24,8 @@
PRGNAM=fastqc PRGNAM=fastqc
SRCNAM=FastQC SRCNAM=FastQC
VERSION=${VERSION:-0.11.7} VERSION=${VERSION:-0.11.8}
SRCVER=${SRCVER:-v0.11.7} SRCVER=${SRCVER:-v0.11.8}
BUILD=${BUILD:-1} BUILD=${BUILD:-1}
TAG=${TAG:-_SBo} TAG=${TAG:-_SBo}
@ -58,7 +58,7 @@ find -L . \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
install -D -m755 $PRGNAM $PKG/usr/share/java/$PRGNAM/$PRGNAM install -D -m755 $PRGNAM $PKG/usr/share/java/$PRGNAM/$PRGNAM
cp -a Configuration net org Templates uk $JBZIP $SAM $CISD $PKG/usr/share/java/$PRGNAM cp -a Configuration net org Templates Help uk $JBZIP $SAM $CISD $PKG/usr/share/java/$PRGNAM
mkdir -p $PKG/usr/bin mkdir -p $PKG/usr/bin
cd $PKG/usr/bin cd $PKG/usr/bin
@ -69,7 +69,10 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a Help *.txt $PKG/usr/doc/$PRGNAM-$VERSION cd $PKG/usr/doc/$PRGNAM-$VERSION
ln -s ../../share/java/$PRGNAM/Help
cd -
cp -a *.txt $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
# Menu item and icon # Menu item and icon

10
academic/fastqc/fastqc.info
View file

@ -1,10 +1,10 @@
PRGNAM="fastqc" PRGNAM="fastqc"
VERSION="0.11.7" VERSION="0.11.8"
HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
DOWNLOAD="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.7.zip" DOWNLOAD="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.8.zip"
MD5SUM="8fead05fa62c5e723f0d2157a9b5fcd4" MD5SUM="bdaf3b9fe957681b3a12349fdfa1c6c0"
DOWNLOAD_x86_64="" DOWNLOAD_x86_64=""
MD5SUM_x86_64="" MD5SUM_x86_64=""
REQUIRES="jdk" REQUIRES="jdk"
MAINTAINER="Petar Petrov" MAINTAINER="Rob van Nues"
EMAIL="slackalaxy@gmail.com" EMAIL="sborg63@disroot.org"