From be6670349055ce705f7a8f6289f323dc4ccee57f Mon Sep 17 00:00:00 2001
From: Rob van Nues <sborg63@disroot.org>
Date: Fri, 4 Sep 2020 00:46:23 +0700
Subject: [PATCH] academic/pysam: Updated for version 0.16.0.1.

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
---
 academic/pysam/pysam.SlackBuild | 14 +++++++-------
 academic/pysam/pysam.info       |  8 ++++----
 2 files changed, 11 insertions(+), 11 deletions(-)

diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild
index 1145e63733..48a8ef263f 100644
--- a/academic/pysam/pysam.SlackBuild
+++ b/academic/pysam/pysam.SlackBuild
@@ -2,7 +2,7 @@
 
 # Slackware build script for pysam
 
-# Copyright 2017 Rob van Nues
+# Copyright 2017-2020 Rob van Nues
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -24,8 +24,8 @@
 
 
 PRGNAM=pysam
-VERSION=${VERSION:-0.15.4}
-BUILD=${BUILD:-2}
+VERSION=${VERSION:-0.16.0.1}
+BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
 #set which python version to install it for
@@ -75,10 +75,10 @@ find -L . \
  \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
   -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
 
-###When pysam gets linked to htslib-1.10 this can be done again:
-##use system htslib instead:
-#export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
-#export HTSLIB_INCLUDE_DIR=/usr/include
+### pysam now linked to htslib-1.10 so this can be done again:
+##use system htslib:
+export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
+export HTSLIB_INCLUDE_DIR=/usr/include
 
 #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook
 chmod 644 pysam.egg-info/*
diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info
index 8e87762f0f..19fac12bab 100644
--- a/academic/pysam/pysam.info
+++ b/academic/pysam/pysam.info
@@ -1,10 +1,10 @@
 PRGNAM="pysam"
-VERSION="0.15.4"
+VERSION="0.16.0.1"
 HOMEPAGE="https://github.com/pysam-developers/pysam"
-DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.15.4.tar.gz"
-MD5SUM="fed157466d6e267e32593119c05247b2"
+DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.16.0.1.tar.gz"
+MD5SUM="5b4b73431f2511727f4fef43a67b392e"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
-REQUIRES="python3-Cython"
+REQUIRES="python3-Cython htslib"
 MAINTAINER="Rob van Nues"
 EMAIL="sborg63@disroot.org"