academic/plasmidomics: Include manual page and better icon

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>

academic/plasmidomics/plasmidomics.1

@@ -0,0 +1,39 @@
+.\"                                      Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH PLASMIDOMICS 1 "November 24, 2007"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh        disable hyphenation
+.\" .hy        enable hyphenation
+.\" .ad l      left justify
+.\" .ad b      justify to both left and right margins
+.\" .nf        disable filling
+.\" .fi        enable filling
+.\" .br        insert line break
+.\" .sp <n>    insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+Plasmidomics \- draw plasmids and vector maps with PostScript export
+.SH SYNOPSIS
+plasmidomics
+.br
+python /usr/bin/plasmidomics
+.SH DESCRIPTION
+This manual page briefly describes Plasmidomics.
+.PP
+Plasmidomics is written for easy drawing of plasmids and vector maps to use them in theses, presentations or other forms of publications. It natively supports PostScript as output format.
+.SH OPTIONS
+There are no options!
+.PP
+.SH SEE ALSO
+The program is documented fully in the README,
+available in /usr/doc/plasmidomics-$VERSION folder.
+.SH AUTHOR
+Plasmidomics was written by Robert Winkler <robert.winkler@bioprocess.org>.
+.PP
+This manual page was written by Robert Winkler <robert.winkler@bioprocess.org>,
+for the Debian project (but may be used by others). It was adapted for Slackware,
+with minor modifications by Petar Petrov <ppetrov@paju.oulu.fi> (2011)

academic/plasmidomics/plasmidomics.SlackBuild

@@ -1,19 +1,34 @@
 #!/bin/sh
 
 # Slackware build script for plasmidomics
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and 
-# hereby submitted to the public domain
 
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING 
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ 
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+# Copyright 2011  Petar Petrov, ppetrov@paju.oulu.fi
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=plasmidomics			
 VERSION=${VERSION:-0.2}
-ARCH=noarch	
-BUILD=${BUILD:-1}
+BUILD=${BUILD:-2}
 TAG=${TAG:-_SBo}		
 
+ARCH=noarch	
+
 CWD=$(pwd)
 TMP=${TMP:-/tmp/SBo}	
 PKG=$TMP/package-$PRGNAM
@@ -25,20 +40,20 @@ rm -rf $PKG
 mkdir -p $TMP $PKG $OUTPUT
 cd $TMP
 rm -rf $PRGNAM-$VERSION
-tar -jxvf $CWD/$PRGNAM-$VERSION.tar.bz2
+tar xvf $CWD/$PRGNAM-$VERSION.tar.bz2
 cd $PRGNAM-$VERSION
 
-install -D -m755 plasmid $PKG/usr/bin/plasmidomics
+install -D -m755 plasmid $PKG/usr/bin/$PRGNAM
+
+mkdir -p $PKG/usr/man/man1
+gzip -9c $CWD/$PRGNAM.1 > $PKG/usr/man/man1/$PRGNAM.1.gz
 
-# Menu item and icon
 mkdir -p $PKG/usr/share/{applications,pixmaps}
 cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications/
 cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a \
-  AUTHORS COPYRIGHT README \
-  $PKG/usr/doc/$PRGNAM-$VERSION/
+cp -a AUTHORS COPYRIGHT README $PKG/usr/doc/$PRGNAM-$VERSION/
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 
 mkdir -p $PKG/install

academic/plasmidomics/plasmidomics.desktop

@@ -1,7 +1,7 @@
 [Desktop Entry]
 Categories=Education;
 Exec=plasmidomics
-Icon=plasmidomics.png
+Icon=plasmidomics
 Name=Plasmidomics
 StartupNotify=false
 Type=Application

academic/plasmidomics/plasmidomics.info

@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 MAINTAINER="Petar Petrov"
 EMAIL="ppetrov@paju.oulu.fi"
-APPROVED="Niels Horn"
+APPROVED="rworkman"

academic/plasmidomics/slack-desc

@@ -11,9 +11,9 @@ plasmidomics:
 plasmidomics: Plasmidomics is an open source program for easy drawing of plasmids
 plasmidomics: and vector maps with high-quality graphics export.
 plasmidomics:
-plasmidomics:
-plasmidomics:
-plasmidomics:
-plasmidomics:
-plasmidomics:
 plasmidomics: Home: http://www.bioprocess.org/plasmid
+plasmidomics:
+plasmidomics:
+plasmidomics:
+plasmidomics:
+plasmidomics: