mirror of
https://github.com/Ponce/slackbuilds
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academic/suitesparse: Updated for version 4.5.4 + new maintainer
Signed-off-by: Christoph Willing <chris.willing@iinet.net.au>
This commit is contained in:
Christoph Willing
Willy Sudiarto Raharjo
parent
96ada775ca
commit
a457f9cf7c
4 changed files with 59 additions and 387 deletions
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@ -20,8 +20,14 @@ Suitesparse is an optional dependency for the octave package.
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NOTES:
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* CHOLMOD can also be compiled to use the METIS library, but it is not
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used here because its licensing terms exclude it from Octave.
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* CHOLMOD is now compiled to use the METIS library. It was not
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used previously because the licensing terms of earlier METIS
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versions excluded it from Octave in some circumstances. Recent
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versions of METIS now use the Apache License Version 2.0 and
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should cause no problems. However if it is still desired to
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build CHOLMOD without METIS, set the USEMETIS environment
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variable to "no" when running the SlackBuild e.g.
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USEMETIS=no sh suitesparse.SlackBuild
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* CXSparse is a superset of CSparse, and the two share common header
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names, so it does not make sense to build both. CXSparse is built
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@ -1,354 +0,0 @@
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#===============================================================================
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# UFconfig.mk: common configuration file for the SuiteSparse
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#===============================================================================
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# This file contains all configuration settings for all packages authored or
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# co-authored by Tim Davis at the University of Florida:
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#
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# Package Version Description
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# ------- ------- -----------
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# AMD 1.2 or later approximate minimum degree ordering
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# COLAMD 2.4 or later column approximate minimum degree ordering
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# CCOLAMD 1.0 or later constrained column approximate minimum degree ordering
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# CAMD any constrained approximate minimum degree ordering
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# UMFPACK 4.5 or later sparse LU factorization, with the BLAS
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# CHOLMOD any sparse Cholesky factorization, update/downdate
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# KLU 0.8 or later sparse LU factorization, BLAS-free
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# BTF 0.8 or later permutation to block triangular form
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# LDL 1.2 or later concise sparse LDL'
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# LPDASA any linear program solve (dual active set algorithm)
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# CXSparse any extended version of CSparse (int/long, real/complex)
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# SuiteSparseQR any sparse QR factorization
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#
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# The UFconfig directory and the above packages should all appear in a single
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# directory, in order for the Makefile's within each package to find this file.
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#
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# To enable an option of the form "# OPTION = ...", edit this file and
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# delete the "#" in the first column of the option you wish to use.
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#------------------------------------------------------------------------------
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# Generic configuration
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#------------------------------------------------------------------------------
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# C compiler and compiler flags: These will normally not give you optimal
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# performance. You should select the optimization parameters that are best
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# for your system. On Linux, use "CFLAGS = -O3 -fexceptions" for example.
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CC = cc
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# CFLAGS = -O (for example; see below for details)
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# C++ compiler (also uses CFLAGS)
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CPLUSPLUS = g++
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# ranlib, and ar, for generating libraries
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RANLIB = ranlib
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AR = ar cr
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# delete and rename a file
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RM = rm -f
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MV = mv -f
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# Fortran compiler (not normally required)
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F77 = gfortran
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F77FLAGS = -O
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F77LIB =
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# C and Fortran libraries
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LIB = -lm
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# For compiling MATLAB mexFunctions (MATLAB 7.5 or later)
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MEX = mex -O -largeArrayDims -lmwlapack -lmwblas
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# For compiling MATLAB mexFunctions (MATLAB 7.3 and 7.4)
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# MEX = mex -O -largeArrayDims -lmwlapack
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# For MATLAB 7.2 or earlier, you must use one of these options:
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# MEX = mex -O -lmwlapack
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# MEX = mex -O
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# Which version of MAKE you are using (default is "make")
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# MAKE = make
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# MAKE = gmake
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#------------------------------------------------------------------------------
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# BLAS and LAPACK configuration:
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#------------------------------------------------------------------------------
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# UMFPACK and CHOLMOD both require the BLAS. CHOLMOD also requires LAPACK.
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# See Kazushige Goto's BLAS at http://www.cs.utexas.edu/users/flame/goto/ or
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# http://www.tacc.utexas.edu/~kgoto/ for the best BLAS to use with CHOLMOD.
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# LAPACK is at http://www.netlib.org/lapack/ . You can use the standard
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# Fortran LAPACK along with Goto's BLAS to obtain very good performance.
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# CHOLMOD gets a peak numeric factorization rate of 3.6 Gflops on a 3.2 GHz
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# Pentium 4 (512K cache, 4GB main memory) with the Goto BLAS, and 6 Gflops
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# on a 2.5Ghz dual-core AMD Opteron.
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# These settings will probably not work, since there is no fixed convention for
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# naming the BLAS and LAPACK library (*.a or *.so) files.
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# Using the Goto BLAS:
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# BLAS = -lgoto -lgfortran -lgfortranbegin -lg2c
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# This is probably slow ... it might connect to the Standard Reference BLAS:
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BLAS = -lblas -lgfortran -lgfortranbegin
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LAPACK = -llapack
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# Using non-optimized versions:
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# BLAS = -lblas_plain -lgfortran -lgfortranbegin -lg2c
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# LAPACK = -llapack_plain
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# The BLAS might not contain xerbla, an error-handling routine for LAPACK and
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# the BLAS. Also, the standard xerbla requires the Fortran I/O library, and
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# stops the application program if an error occurs. A C version of xerbla
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# distributed with this software (UFconfig/xerbla/libcerbla.a) includes a
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# Fortran-callable xerbla routine that prints nothing and does not stop the
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# application program. This is optional.
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# XERBLA = ../../UFconfig/xerbla/libcerbla.a
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# If you wish to use the XERBLA in LAPACK and/or the BLAS instead,
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# use this option:
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XERBLA =
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# If you wish to use the Fortran UFconfig/xerbla/xerbla.f instead, use this:
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# XERBLA = ../../UFconfig/xerbla/libxerbla.a
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#------------------------------------------------------------------------------
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# METIS, optionally used by CHOLMOD
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#------------------------------------------------------------------------------
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# If you do not have METIS, or do not wish to use it in CHOLMOD, you must
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# compile CHOLMOD with the -DNPARTITION flag. You must also use the
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# "METIS =" option, below.
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# The path is relative to where it is used, in CHOLMOD/Lib, CHOLMOD/MATLAB, etc.
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# You may wish to use an absolute path. METIS is optional. Compile
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# CHOLMOD with -DNPARTITION if you do not wish to use METIS.
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#METIS_PATH = ../../metis-4.0
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#METIS = ../../metis-4.0/libmetis.a
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# If you use CHOLMOD_CONFIG = -DNPARTITION then you must use the following
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# options:
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METIS_PATH =
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METIS =
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#------------------------------------------------------------------------------
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# UMFPACK configuration:
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#------------------------------------------------------------------------------
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# Configuration flags for UMFPACK. See UMFPACK/Source/umf_config.h for details.
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#
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# -DNBLAS do not use the BLAS. UMFPACK will be very slow.
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# -D'LONGBLAS=long' or -DLONGBLAS='long long' defines the integers used by
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# LAPACK and the BLAS (defaults to 'int')
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# -DNSUNPERF do not use the Sun Perf. Library (default is use it on Solaris)
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# -DNPOSIX do not use POSIX routines sysconf and times.
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# -DGETRUSAGE use getrusage
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# -DNO_TIMER do not use any timing routines
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# -DNRECIPROCAL do not multiply by the reciprocal
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# -DNO_DIVIDE_BY_ZERO do not divide by zero
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UMFPACK_CONFIG =
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#------------------------------------------------------------------------------
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# CHOLMOD configuration
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#------------------------------------------------------------------------------
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# CHOLMOD Library Modules, which appear in libcholmod.a:
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# Core requires: none
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# Check requires: Core
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# Cholesky requires: Core, AMD, COLAMD. optional: Partition, Supernodal
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# MatrixOps requires: Core
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# Modify requires: Core
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# Partition requires: Core, CCOLAMD, METIS. optional: Cholesky
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# Supernodal requires: Core, BLAS, LAPACK
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#
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# CHOLMOD test/demo Modules (all are GNU GPL, do not appear in libcholmod.a):
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# Tcov requires: Core, Check, Cholesky, MatrixOps, Modify, Supernodal
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# optional: Partition
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# Valgrind same as Tcov
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# Demo requires: Core, Check, Cholesky, MatrixOps, Supernodal
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# optional: Partition
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#
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# Configuration flags:
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# -DNCHECK do not include the Check module. License GNU LGPL
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# -DNCHOLESKY do not include the Cholesky module. License GNU LGPL
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# -DNPARTITION do not include the Partition module. License GNU LGPL
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# also do not include METIS.
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# -DNGPL do not include any GNU GPL Modules in the CHOLMOD library:
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# -DNMATRIXOPS do not include the MatrixOps module. License GNU GPL
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# -DNMODIFY do not include the Modify module. License GNU GPL
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# -DNSUPERNODAL do not include the Supernodal module. License GNU GPL
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#
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# -DNPRINT do not print anything.
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# -D'LONGBLAS=long' or -DLONGBLAS='long long' defines the integers used by
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# LAPACK and the BLAS (defaults to 'int')
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# -DNSUNPERF for Solaris only. If defined, do not use the Sun
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# Performance Library
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CHOLMOD_CONFIG = -DNPARTITION
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#------------------------------------------------------------------------------
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# SuiteSparseQR configuration:
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#------------------------------------------------------------------------------
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# The SuiteSparseQR library can be compiled with the following options:
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#
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# -DNPARTITION do not include the CHOLMOD partition module
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# -DNEXPERT do not include the functions in SuiteSparseQR_expert.cpp
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# -DTIMING enable timing and flop counts
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# -DHAVE_TBB enable the use of Intel's Threading Building Blocks (TBB)
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# default, without timing, without TBB:
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SPQR_CONFIG = -DNPARTITION
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# with timing and TBB:
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# SPQR_CONFIG = -DTIMING -DHAVE_TBB
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# with timing
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# SPQR_CONFIG = -DTIMING
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# with TBB, you must select this:
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# TBB = -ltbb
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# without TBB:
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TBB =
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# with timing, you must include the timing library:
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# RTLIB = -lrt
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# without timing
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RTLIB =
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#------------------------------------------------------------------------------
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# Linux
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#------------------------------------------------------------------------------
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# Using default compilers:
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# CC = gcc
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CFLAGS = -O3 -fexceptions
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# alternatives:
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# CFLAGS = -g -fexceptions \
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-Wall -W -Wshadow -Wmissing-prototypes -Wstrict-prototypes \
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-Wredundant-decls -Wnested-externs -Wdisabled-optimization -ansi
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# CFLAGS = -O3 -fexceptions \
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-Wall -W -Werror -Wshadow -Wmissing-prototypes -Wstrict-prototypes \
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-Wredundant-decls -Wnested-externs -Wdisabled-optimization -ansi
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# CFLAGS = -O3 -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
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# CFLAGS = -O3
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# CFLAGS = -O3 -g -fexceptions
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# CFLAGS = -g -fexceptions \
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-Wall -W -Wshadow \
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-Wredundant-decls -Wdisabled-optimization -ansi
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# consider:
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# -fforce-addr -fmove-all-movables -freduce-all-givs -ftsp-ordering
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# -frename-registers -ffast-math -funroll-loops
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# Using the Goto BLAS:
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# BLAS = -lgoto -lfrtbegin -lg2c $(XERBLA) -lpthread
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# Using Intel's icc and ifort compilers:
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# (does not work for mexFunctions unless you add a mexopts.sh file)
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# F77 = ifort
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# CC = icc
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# CFLAGS = -O3 -xN -vec_report=0
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# CFLAGS = -g
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# old (broken): CFLAGS = -ansi -O3 -ip -tpp7 -xW -vec_report0
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# 64bit:
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# F77FLAGS = -O -m64
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# CFLAGS = -O3 -fexceptions -m64
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# BLAS = -lgoto64 -lfrtbegin -lg2c -lpthread $(XERBLA)
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# LAPACK = -llapack64
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# SUSE Linux 10.1, AMD Opteron, with GOTO Blas
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# F77 = gfortran
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# BLAS = -lgoto_opteron64 -lgfortran
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# SUSE Linux 10.1, Intel Pentium, with GOTO Blas
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# F77 = gfortran
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# BLAS = -lgoto -lgfortran
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#------------------------------------------------------------------------------
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# Solaris
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#------------------------------------------------------------------------------
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# 32-bit
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# CFLAGS = -KPIC -dalign -xc99=%none -Xc -xlibmieee -xO5 -xlibmil -m32
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# 64-bit
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# CFLAGS = -fast -KPIC -xc99=%none -xlibmieee -xlibmil -m64 -Xc
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# FFLAGS = -fast -KPIC -dalign -xlibmil -m64
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# The Sun Performance Library includes both LAPACK and the BLAS:
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# BLAS = -xlic_lib=sunperf
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# LAPACK =
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#------------------------------------------------------------------------------
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# Compaq Alpha
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#------------------------------------------------------------------------------
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# 64-bit mode only
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# CFLAGS = -O2 -std1
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# BLAS = -ldxml
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# LAPACK =
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#------------------------------------------------------------------------------
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# Macintosh
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#------------------------------------------------------------------------------
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# CC = gcc
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# CFLAGS = -O3 -fno-common -no-cpp-precomp -fexceptions
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# LIB = -lstdc++
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# BLAS = -framework Accelerate
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# LAPACK = -framework Accelerate
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#------------------------------------------------------------------------------
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# IBM RS 6000
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#------------------------------------------------------------------------------
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# BLAS = -lessl
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# LAPACK =
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# 32-bit mode:
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# CFLAGS = -O4 -qipa -qmaxmem=16384 -qproto
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# F77FLAGS = -O4 -qipa -qmaxmem=16384
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# 64-bit mode:
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# CFLAGS = -O4 -qipa -qmaxmem=16384 -q64 -qproto
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# F77FLAGS = -O4 -qipa -qmaxmem=16384 -q64
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# AR = ar -X64
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#------------------------------------------------------------------------------
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# SGI IRIX
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#------------------------------------------------------------------------------
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# BLAS = -lscsl
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# LAPACK =
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# 32-bit mode
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# CFLAGS = -O
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# 64-bit mode (32 bit int's and 64-bit long's):
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# CFLAGS = -64
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# F77FLAGS = -64
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# SGI doesn't have ranlib
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# RANLIB = echo
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#------------------------------------------------------------------------------
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# AMD Opteron (64 bit)
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#------------------------------------------------------------------------------
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# BLAS = -lgoto_opteron64 -lg2c
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# LAPACK = -llapack_opteron64
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# SUSE Linux 10.1, AMD Opteron
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# F77 = gfortran
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# BLAS = -lgoto_opteron64 -lgfortran
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# LAPACK = -llapack_opteron64
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#------------------------------------------------------------------------------
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# remove object files and profile output
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#------------------------------------------------------------------------------
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CLEAN = *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno
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@ -2,17 +2,38 @@
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# Slackware build script for suitesparse
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# Written by Pablo Santamaria (pablosantamaria@gmail.com)
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# Copyright 2017 Christoph Willing, Brisbane Australia
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# All rights reserved.
|
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# Thanks to Pablo Santamaria for previous versions
|
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#
|
||||
# Redistribution and use of this script, with or without modification, is
|
||||
# permitted provided that the following conditions are met:
|
||||
#
|
||||
# 1. Redistributions of this script must retain the above copyright
|
||||
# notice, this list of conditions and the following disclaimer.
|
||||
#
|
||||
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
|
||||
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
|
||||
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
|
||||
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
|
||||
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
|
||||
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
|
||||
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
|
||||
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
|
||||
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
|
||||
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||
|
||||
PRGNAM=suitesparse
|
||||
VERSION=${VERSION:-4.2.1}
|
||||
SRCNAM=SuiteSparse
|
||||
VERSION=${VERSION:-4.5.4}
|
||||
BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
|
||||
|
||||
if [ -z "$ARCH" ]; then
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case "$( uname -m )" in
|
||||
i?86) ARCH=i486 ;;
|
||||
i?86) ARCH=i586 ;;
|
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arm*) ARCH=arm ;;
|
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# Unless $ARCH is already set, use uname -m for all other archs:
|
||||
*) ARCH=$( uname -m ) ;;
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esac
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fi
|
||||
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@ -22,8 +43,8 @@ TMP=${TMP:-/tmp/SBo}
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|||
PKG=$TMP/package-$PRGNAM
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OUTPUT=${OUTPUT:-/tmp}
|
||||
|
||||
if [ "$ARCH" = "i486" ]; then
|
||||
SLKCFLAGS="-O2 -march=i486 -mtune=i686"
|
||||
if [ "$ARCH" = "i586" ]; then
|
||||
SLKCFLAGS="-O2 -march=i586 -mtune=i686"
|
||||
LIBDIRSUFFIX=""
|
||||
elif [ "$ARCH" = "i686" ]; then
|
||||
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
|
||||
|
|
@ -36,39 +57,38 @@ else
|
|||
LIBDIRSUFFIX=""
|
||||
fi
|
||||
|
||||
metis="" ; [ "${USEMETIS:-yes}" != "yes" ] && metis="CHOLMOD_CONFIG=-DNPARTITION"
|
||||
|
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set -e
|
||||
|
||||
rm -rf $PKG
|
||||
mkdir -p $TMP $PKG $OUTPUT
|
||||
cd $TMP
|
||||
rm -rf SuiteSparse
|
||||
tar xvf $CWD/SuiteSparse-$VERSION.tar.gz
|
||||
|
||||
cd SuiteSparse
|
||||
rm -rf $SRCNAM
|
||||
tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
|
||||
cd $SRCNAM
|
||||
chown -R root:root .
|
||||
find -L . \
|
||||
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
|
||||
-o -perm 511 \) -exec chmod 755 {} \; -o \
|
||||
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
|
||||
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
|
||||
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
|
||||
|
||||
for lib in SuiteSparse_config AMD CAMD COLAMD BTF KLU LDL CCOLAMD UMFPACK CHOLMOD CXSparse SPQR RBio; do
|
||||
make -C $lib library CFLAGS="$SLKCFLAGS -DNPARTITION"
|
||||
done
|
||||
|
||||
mkdir -p $PKG/usr/lib$LIBDIRSUFFIX
|
||||
mkdir -p $PKG/usr/include/suitesparse
|
||||
for lib in SuiteSparse_config AMD CAMD COLAMD BTF KLU LDL CCOLAMD UMFPACK CHOLMOD CXSparse SPQR RBio; do
|
||||
make -C $lib INSTALL_LIB="$PKG/usr/lib$LIBDIRSUFFIX" INSTALL_INCLUDE="$PKG/usr/include/suitesparse" install
|
||||
done
|
||||
|
||||
mkdir -p $PKG/usr/lib$LIBDIRSUFFIX
|
||||
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
|
||||
cp -a README.txt $PKG/usr/doc/$PRGNAM-$VERSION
|
||||
for lib in AMD CAMD COLAMD BTF KLU LDL CCOLAMD UMFPACK CHOLMOD CXSparse SPQR RBio; do
|
||||
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION/$lib
|
||||
cp -a $lib/Doc/README* $lib/Doc/*.pdf $lib/Doc/ChangeLog $lib/Doc/License* \
|
||||
$PKG/usr/doc/$PRGNAM-$VERSION/$lib || true
|
||||
done
|
||||
|
||||
make install \
|
||||
MY_METIS_INC=/usr/include/metis MY_METIS_LIB=/usr/lib$LIBDIRSUFFIX/libmetis.so BLAS=-lblas \
|
||||
$metis \
|
||||
INSTALL_INCLUDE=$PKG/usr/include/suitesparse INSTALL_LIB=$PKG/usr/lib$LIBDIRSUFFIX \
|
||||
INSTALL_DOC=$PKG/usr/doc/$PRGNAM-$VERSION
|
||||
chrpath --replace /usr/lib$LIBDIRSUFFIX $PKG/usr/lib$LIBDIRSUFFIX/*
|
||||
|
||||
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
|
||||
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
|
||||
|
||||
cp -a LICENSE.txt $PKG/usr/doc/$PRGNAM-$VERSION
|
||||
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
|
||||
|
||||
mkdir -p $PKG/install
|
||||
|
|
|
|||
|
|
@ -1,10 +1,10 @@
|
|||
PRGNAM="suitesparse"
|
||||
VERSION="4.2.1"
|
||||
VERSION="4.5.4"
|
||||
HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
|
||||
DOWNLOAD="http://pkgs.fedoraproject.org/repo/pkgs/suitesparse/SuiteSparse-4.2.1.tar.gz/4628df9eeae10ae5f0c486f1ac982fce/SuiteSparse-4.2.1.tar.gz"
|
||||
MD5SUM="4628df9eeae10ae5f0c486f1ac982fce"
|
||||
DOWNLOAD="http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-4.5.4.tar.gz"
|
||||
MD5SUM="f6ab689442e64a1624a47aa220072d1b"
|
||||
DOWNLOAD_x86_64=""
|
||||
MD5SUM_x86_64=""
|
||||
REQUIRES="lapack"
|
||||
MAINTAINER="Pablo Santamaria"
|
||||
EMAIL="pablosantamaria@gmail.com"
|
||||
REQUIRES="lapack metis chrpath"
|
||||
MAINTAINER="Christoph Willing"
|
||||
EMAIL="chris.willing@linux.com"
|
||||
|
|
|
|||
Loading…
Reference in a new issue