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academic/pysam: Updated for version 0.15.4.

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Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Rob van Nues 2020-03-07 07:30:51 +07:00 committed by Willy Sudiarto Raharjo
parent 463c49a57d
commit a0d23c9fd4
2 changed files with 9 additions and 8 deletions
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9
academic/pysam/pysam.SlackBuild
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@ -24,7 +24,7 @@
PRGNAM=pysam
VERSION=${VERSION:-0.15.3}
VERSION=${VERSION:-0.15.4}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@ -74,9 +74,10 @@ find -L . \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
#use system htslib instead
export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
export HTSLIB_INCLUDE_DIR=/usr/include
###When pysam gets linked to htslib-1.10 this can be done again:
##use system htslib instead:
#export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
#export HTSLIB_INCLUDE_DIR=/usr/include
if $PYTHON2; then
python setup.py install --root=$PKG

8
academic/pysam/pysam.info
View file

@ -1,10 +1,10 @@
PRGNAM="pysam"
VERSION="0.15.3"
VERSION="0.15.4"
HOMEPAGE="https://github.com/pysam-developers/pysam"
DOWNLOAD="https://github.com/pysam-developers/pysam/archive/v0.15.3/pysam-0.15.3.tar.gz"
MD5SUM="f8586362c20c754bc698c04e32e11a63"
DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.15.4.tar.gz"
MD5SUM="fed157466d6e267e32593119c05247b2"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="python3 htslib"
REQUIRES="python3-Cython"
MAINTAINER="Rob van Nues"
EMAIL="sborg63@disroot.org"