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academic/primer3: Build bump, new symlink and misc. cleanup.

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Signed-off-by: Erik Hanson <erik@slackbuilds.org>
This commit is contained in:
Petar Petrov 2011-11-07 18:39:00 -06:00 committed by Robby Workman
parent 278bd97c4d
commit 95eb3a89b9
2 changed files with 15 additions and 11 deletions
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24
academic/primer3/primer3.SlackBuild
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@ -1,17 +1,19 @@
#!/bin/sh #!/bin/sh
# Slackware build script for primer3 # Slackware build script for primer3
# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and # Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
# hereby submitted to the public domain # hereby submitted to the public domain
# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING # Thanks to Niels Horn for correcting the CFLAGS.
# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. # RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
PRGNAM=primer3 PRGNAM=primer3
VERSION=${VERSION:-2.2.3} VERSION=${VERSION:-2.2.3}
BUILD=${BUILD:-1} BUILD=${BUILD:-2}
TAG=${TAG:-_SBo} TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then if [ -z "$ARCH" ]; then
case "$( uname -m )" in case "$( uname -m )" in
@ -62,9 +64,9 @@ sed -i "/^CFLAGS/s/=/+=/" Makefile
CFLAGS="$SLKCFLAGS" \ CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \
make make
# This is recommended, but the tests take a really long time. # This is recommended, but the tests take a really long time.
# Be patient if you uncomment the next line. # Be patient if you uncomment the next line.
# make test # make test
@ -74,14 +76,16 @@ install -D -m755 ntdpal $PKG/usr/bin/ntdpal
install -D -m755 ntthal $PKG/usr/bin/ntthal install -D -m755 ntthal $PKG/usr/bin/ntthal
install -D -m755 oligotm $PKG/usr/bin/oligotm install -D -m755 oligotm $PKG/usr/bin/oligotm
cd .. # eprimer32 from EMBOSS expects the binary to be called primer32_core
ln -s primer3_core $PKG/usr/bin/primer32_core
cd $TMP/$PRGNAM-$VERSION
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \ cp -a \
COPYING.txt example primer3_manual.htm \ src/release_notes.txt COPYING.txt example primer3_manual.htm \
$PKG/usr/doc/$PRGNAM-$VERSION $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References

2
academic/primer3/primer3.info
View file

@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64="" MD5SUM_x86_64=""
MAINTAINER="Petar Petrov" MAINTAINER="Petar Petrov"
EMAIL="ppetrov@paju.oulu.fi" EMAIL="ppetrov@paju.oulu.fi"
APPROVED="Niels Horn" APPROVED="Niels Horn,Erik Hanson"