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academic/EMBASSY: Updated for version 6.6.0.

Browse source 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Petar Petrov 2013-12-14 11:47:09 +07:00 committed by Erik Hanson
parent 3489ae3da8
commit 94efe73619
2 changed files with 45 additions and 45 deletions
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14
academic/EMBASSY/EMBASSY.SlackBuild
View file

@ -2,7 +2,7 @@
# Slackware build script for EMBASSY
# Copyright 2011-2012 Petar Petrov, ppetrov@paju.oulu.fi
# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE
PRGNAM=EMBASSY
VERSION=${VERSION:-6.5.7} # Keep this the same version as EMBOSS
VERSION=${VERSION:-6.6.0} # Keep this the same version as EMBOSS
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@ -56,7 +56,7 @@ fi
# EMBASSY components and their versions
CBSTOOLS=CBSTOOLS-1.0.0.650
CLUSTALOMEGA=CLUSTALOMEGA-0.2.0.650
CLUSTALOMEGA=CLUSTALOMEGA-1.1.0
DOMAINATRIX=DOMAINATRIX-0.1.650
DOMALIGN=DOMALIGN-0.1.650
DOMSEARCH=DOMSEARCH-0.1.650
@ -105,10 +105,10 @@ tar xvf $CWD/$VIENNA.tar.gz
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
-exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
-exec chmod 644 {} \;
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-o -perm 511 \) -exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
# Build CBSTOOLS
cd $TMP/$PRGNAM-$VERSION/$CBSTOOLS

76
academic/EMBASSY/EMBASSY.info
View file

@ -1,44 +1,44 @@
PRGNAM="EMBASSY"
VERSION="6.5.7"
VERSION="6.6.0"
HOMEPAGE="http://emboss.sourceforge.net/embassy/"
DOWNLOAD="ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/CBSTOOLS-1.0.0.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/CLUSTALOMEGA-0.2.0.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/DOMAINATRIX-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/DOMALIGN-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/DOMSEARCH-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/EMNU-1.05.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/ESIM4-1.0.0.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/HMMER-2.3.2.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/IPRSCAN-4.3.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MEME-4.7.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MSE-3.0.0.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MYEMBOSS-6.5.1.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MYEMBOSSDEMO-6.5.0.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/PHYLIPNEW-3.69.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/SIGNATURE-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/STRUCTURE-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/TOPO-2.0.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/VIENNA-1.7.2.650.tar.gz"
MD5SUM="4913776ee5ff93ae839762107f8d8bc8 \
f24967741eb2fe9c3bccd6458276e127 \
d7539f6ee6f25bb401ffad2802441010 \
079a6371390201fa39f19c25cce8d5ba \
5fd0e943f4db9f9ea008eabd68dc60e7 \
6e0b7ac797554c52f413d23e5781e71b \
2ca9069bf9c87697bf52c77b25a659d7 \
d82017cc68ce3d381e8cc6dcfd68f39e \
81720978302afc8d855b316651be5b2a \
4d2dac5a2d66ad43552271be81c1cd1b \
3b26ecbdf8032680f1de148f5d91d776 \
54e9ca4dadd0b988f8964f886c6f026c \
f3cb3421a79e7e6466686628de346b20 \
488d117d32a391a9b53c60260595e67b \
361773a6f1b0b862f5cbf3d4d3ee1fa0 \
40afa99f995f34275005b76f8b05c337 \
5a0b0c478cece42cc564599b91f9c1cf \
633c16e28818b0dc4d3ae084a7beae56"
DOWNLOAD="ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/MYEMBOSS-6.5.1.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/MYEMBOSSDEMO-6.5.0.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.650.tar.gz \
ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.650.tar.gz"
MD5SUM="237577573d9cbe5df18bac8dae17240b \
e4243a86c6127d99b1d501a54a7fbbf3 \
5cbc136ded7826a0066e51074738a5a1 \
d74e58418bf1a4de29c1f945830e9e8a \
f01cea0480c0e9abbd07196084a64451 \
e66d6083191ac1cc804ea80e494005ee \
b4b0f551f5c3901228e77475aa95e856 \
4871d5c8bb0f3cc37f5f34b3126ab171 \
3330f1ee2f4f4237fc40ac6b4b6f8099 \
b2ce9b52ec0540bd56634045664ea2ce \
b79a17a2ad25fe6ffc8d23c7bbf8bc0b \
3b8096d4f5869c6856c60f53fa5f5131 \
d1468bcd15d48374d0d59e14e4c4a6b5 \
b7da94cc7c0f1f6791cd4312a64c225a \
344da0793ab3a85a68b52b3bdf49929a \
fa89b9b0cab3c7fe5b86a56de2a94686 \
9a32d2263a6c67927ab1c237890cc222 \
49c748441e0e3fd9b86429be3db1d025"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="EMBOSS"
MAINTAINER="Petar Petrov"
EMAIL="ppetrov@paju.oulu.fi"
EMAIL="petar.petrov@student.oulu.fi"