academic/sequence-analysis: Updated for version 1.7.2.

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

academic/sequence-analysis/README

@@ -1 +1,20 @@
 A collage of coding projects for biologic sequences analysis.
+
+The upper window panel can hold several sequences, which are both
+editable and selectable. The tabs in the lower analysis panel try to
+keep up with the current sequence selection to provide immediate
+feedback. The selection is used in some modules as only the portion
+being analyzed for other modules i.e. Digest is used to determine if
+enzymes cut in the in or outside of the selection.
+
+Most commonly available sequence formats have been reverse engineered.
+You can also access a sequences from the NCBI via its GID or UID. This
+currently cannot be done from behind a firewall.
+
+Most of the analyses are simple enough that they are obvious to use,
+Composition, pI. Others could stand some documenation i.e. Pairwise
+and Primer Design. The Publish tab uses a string to control the
+layout. Click on the Legend button for some help.
+
+NOTE:
+The 'source' is hosted at SourceForge by the SlackBuild maintainer.

academic/sequence-analysis/sequence-analysis.SlackBuild

@@ -1,19 +1,34 @@
 #!/bin/sh
 
 # Slackware build script for sequence-analysis
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
-# hereby submitted to the public domain
 
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
+# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
+# All rights reserved.
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=sequence-analysis
-VERSION=${VERSION:-1.6.0}
+VERSION=${VERSION:-1.7.2}
-ARCH=noarch
+BUILD=${BUILD:-1}
-BUILD=${BUILD:-2}
 TAG=${TAG:-_SBo}
 
+ARCH=noarch
+
 CWD=$(pwd)
 TMP=${TMP:-/tmp/SBo}
 PKG=$TMP/package-$PRGNAM

academic/sequence-analysis/sequence-analysis.info

@@ -1,10 +1,10 @@
 PRGNAM="sequence-analysis"
-VERSION="1.6.0"
+VERSION="1.7.2"
 HOMEPAGE="http://informagen.com/SA/"
-DOWNLOAD="http://urchlay.naptime.net/~urchlay/src/sa.jar"
+DOWNLOAD="http://sourceforge.net/projects/sboppetrov/files/sequence-analysis/1.7.2/sa.jar"
-MD5SUM="48609bfdd0d689cc62467159a0308886"
+MD5SUM="815c7e6a8717a9e2a7fedc9ed94fbd0e"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES="jdk"
 MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="petar.petrov@student.oulu.fi"