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academic/paml: Updated for version 4.9c.

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Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
This commit is contained in:
Petar Petrov 2016-11-26 22:56:13 +00:00 committed by Willy Sudiarto Raharjo
parent 8688ebd442
commit 8b5da50bf5
No known key found for this signature in database
GPG key ID: 887B8374D7333381
3 changed files with 10 additions and 10 deletions
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12
academic/paml/paml.SlackBuild
View file

@ -23,27 +23,27 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=paml PRGNAM=paml
VERSION=${VERSION:-4.9a} VERSION=${VERSION:-4.9c}
BUILD=${BUILD:-1} BUILD=${BUILD:-1}
TAG=${TAG:-_SBo} TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then if [ -z "$ARCH" ]; then
case "$( uname -m )" in case "$( uname -m )" in
i?86) ARCH=i486 ;; i?86) ARCH=i586 ;;
arm*) ARCH=arm ;; arm*) ARCH=arm ;;
*) ARCH=$( uname -m ) ;; *) ARCH=$( uname -m ) ;;
esac esac
fi fi
MAINVER=4.9a MAINVER=4.9c
CWD=$(pwd) CWD=$(pwd)
TMP=${TMP:-/tmp/SBo} TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp} OUTPUT=${OUTPUT:-/tmp}
if [ "$ARCH" = "i486" ]; then if [ "$ARCH" = "i586" ]; then
SLKCFLAGS="-O2 -march=i486 -mtune=i686" SLKCFLAGS="-O2 -march=i586 -mtune=i686"
LIBDIRSUFFIX="" LIBDIRSUFFIX=""
elif [ "$ARCH" = "i686" ]; then elif [ "$ARCH" = "i686" ]; then
SLKCFLAGS="-O2 -march=i686 -mtune=i686" SLKCFLAGS="-O2 -march=i686 -mtune=i686"
@ -61,7 +61,7 @@ set -e
rm -rf $PKG rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT mkdir -p $TMP $PKG $OUTPUT
cd $TMP cd $TMP
rm -rf ${PRGNAM}${VERSION} rm -rf ${PRGNAM}${MAINVER}
tar xvf $CWD/${PRGNAM}${VERSION}.tgz tar xvf $CWD/${PRGNAM}${VERSION}.tgz
cd ${PRGNAM}${MAINVER} cd ${PRGNAM}${MAINVER}
chown -R root:root . chown -R root:root .

6
academic/paml/paml.info
View file

@ -1,9 +1,9 @@
PRGNAM="paml" PRGNAM="paml"
VERSION="4.9a" VERSION="4.9c"
HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.9a.tgz \ DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.9c.tgz \
http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf" http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf"
MD5SUM="e1c421f3642e2770949ddafcd17a7173 \ MD5SUM="7c3638fdf19ec44b7b2636477d893de6 \
29c851d887eea56b949c01ab42cc48fb" 29c851d887eea56b949c01ab42cc48fb"
DOWNLOAD_x86_64="" DOWNLOAD_x86_64=""
MD5SUM_x86_64="" MD5SUM_x86_64=""

2
academic/paml/slack-desc
View file

@ -16,4 +16,4 @@ paml: reconstructed trees using other programs such as PAUP*, PHYLIP,
paml: MOLPHY, PhyML, RaxML, etc. paml: MOLPHY, PhyML, RaxML, etc.
paml: paml:
paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html
paml: References: /usr/doc/paml-4.9a/References paml: References: /usr/doc/paml-4.9c/References