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academic/pysam: Fix permission.

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Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Rob van Nues 2020-03-14 06:27:44 +07:00 committed by Willy Sudiarto Raharjo
parent c7e81261bb
commit 89c7353cd3
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GPG key ID: 887B8374D7333381
1 changed files with 8 additions and 2 deletions
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10
academic/pysam/pysam.SlackBuild
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@ -25,7 +25,7 @@
PRGNAM=pysam
VERSION=${VERSION:-0.15.4}
BUILD=${BUILD:-1}
BUILD=${BUILD:-2}
TAG=${TAG:-_SBo}
#set which python version to install it for
@ -68,8 +68,9 @@ rm -rf $PRGNAM-$VERSION
tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
cd $PRGNAM-$VERSION
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
\( -perm 777 -o -perm 775 -o -perm 751 -o -perm 750 -o -perm 711 -o -perm 555 \
-o -perm 511 \) -exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
@ -79,6 +80,10 @@ find -L . \
#export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
#export HTSLIB_INCLUDE_DIR=/usr/include
#the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook
chmod 644 pysam.egg-info/*
if $PYTHON2; then
python setup.py install --root=$PKG
fi
@ -95,6 +100,7 @@ cp -a \
$PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
mkdir -p $PKG/install
cat $CWD/slack-desc > $PKG/install/slack-desc