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graphics/amide: Added (Medical Imaging Data Examiner).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
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36
graphics/amide/README
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36
graphics/amide/README
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AMIDE is a competely free tool for viewing, analyzing, and registering
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volumetric medical imaging data sets. It's been written on top of GTK+,
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and runs on any system that supports this toolkit (Linux, Windows,
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Mac OS X, etc.).
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FEATURES:
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* Abitrary orientation, thickness, and time period slice viewing of
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a data set.
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* Thick slabs can be generated by averaging (MPR), taking the
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maximum (MIP), or the minimum (MIP).
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* Multiple data sets can be loaded and viewed at once.
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* Nearest Neighbor and Trilinear interpolation functions
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* Zooming
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* Black/White,White/Black,Red/Green/Blue Temperature,
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Hot Metal/Blue/Green, Spectrum, NIH/UCLA colormaps
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* Thresholding: data sets are thresholded independently.
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* 3-dimensional ROI's can be drawn directly on the images and
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statistics can be generated for these ROI's.
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* Imports raw data files (8bit,16bit,32bit,float,etc).
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* Imports Acr/Nema 2.0, Analyze (SPM), DICOM 3.0, InterFile3.3,
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ECAT 6/7, and Gif87a/89a (using the (X)medcon/libmdc).
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* Imports most clinical DICOM files (using the DCMTK library).
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* Allows cropping and clearing regions of data sets.
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* Anisotropic filtering wizard.
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* Saves studies (ROI and Data Set data) as XML data.
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* Series of slices can be viewed.
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* Fly through movies can be generated as MPEG1 files
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* True volume rendering support with the capability of rendering
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multiple data sets at a time. Series of renderings can be saved
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as MPEG1 movies. Data sets can also be rendered as stereoscopic
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image pairs
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* Alignment of data sets is supported using fiducial markers.
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* A profile tool is included that can calculate gaussian fits and
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FWHM's of the generated line profiles.
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133
graphics/amide/amide.SlackBuild
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133
graphics/amide/amide.SlackBuild
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#!/bin/bash
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# Slackware build script for amide
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# Copyright 2023 Juan M. Lasca <juanmlasca@gmail.com>
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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# permitted provided that the following conditions are met:
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#
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# 1. Redistributions of this script must retain the above copyright
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# notice, this list of conditions and the following disclaimer.
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#
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# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
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# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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cd $(dirname $0) ; CWD=$(pwd)
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PRGNAM=amide
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VERSION=${VERSION:-1.0.6+20231009_c02babd}
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COMMIT=c02babd6b660a8d83c7f90eab69bbff34253923d
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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PKGTYPE=${PKGTYPE:-tgz}
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if [ -z "$ARCH" ]; then
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case "$( uname -m )" in
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i?86) ARCH=i586 ;;
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arm*) ARCH=arm ;;
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*) ARCH=$( uname -m ) ;;
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esac
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fi
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if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
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echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
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exit 0
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fi
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TMP=${TMP:-/tmp/SBo}
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PKG=$TMP/package-$PRGNAM
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OUTPUT=${OUTPUT:-/tmp}
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if [ "$ARCH" = "i586" ]; then
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SLKCFLAGS="-O2 -march=i586 -mtune=i686"
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LIBDIRSUFFIX=""
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elif [ "$ARCH" = "i686" ]; then
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SLKCFLAGS="-O2 -march=i686 -mtune=i686"
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LIBDIRSUFFIX=""
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elif [ "$ARCH" = "x86_64" ]; then
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SLKCFLAGS="-O2 -fPIC"
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LIBDIRSUFFIX="64"
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elif [ "$ARCH" = "aarch64" ]; then
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SLKCFLAGS="-O2 -fPIC"
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LIBDIRSUFFIX="64"
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else
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SLKCFLAGS="-O2"
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LIBDIRSUFFIX=""
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fi
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set -e
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rm -rf $PKG
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mkdir -p $TMP $PKG $OUTPUT
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cd $TMP
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rm -rf $PRGNAM-$COMMIT
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tar xvf $CWD/$PRGNAM-$COMMIT.tar.gz
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cd $PRGNAM-$COMMIT
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chown -R root:root .
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find -L . \
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
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-o -perm 511 \) -exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
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-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
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intltoolize
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libtoolize
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touch gtk-doc.make gnome-doc-utils.make
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autoreconf -i
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CFLAGS="$SLKCFLAGS -Dg_warning=printf" \
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CXXFLAGS="$SLKCFLAGS" \
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./configure \
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--prefix=/usr \
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--libdir=/usr/lib${LIBDIRSUFFIX} \
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--sysconfdir=/etc \
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--localstatedir=/var \
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--mandir=/usr/man \
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--docdir=/usr/doc/$PRGNAM-$VERSION \
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--disable-static \
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--build=$ARCH-slackware-linux \
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--disable-gnome-vfs \
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--disable-doc \
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--disable-scrollkeeper
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# workaround GTK+-2.0 ABI issue
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sed -i '$a\#define g_warning printf' amide_config.h;
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make -j1
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make -j1 install DESTDIR=$PKG
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rm -f $PKG/{,usr/}lib${LIBDIRSUFFIX}/*.la
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find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
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| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
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find $PKG/usr/man -type f -exec gzip -9 {} \;
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for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
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# Correct .desktop file
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sed -i '/Encoding=UTF-8/d;s/Graphics;Education;Science;MedicalSoftware;/Graphics;/' \
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$PKG/usr/share/applications/amide.desktop
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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cp -a \
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RELEASE_NOTES README.md NEWS AUTHORS \
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$PKG/usr/doc/$PRGNAM-$VERSION
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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mkdir -p $PKG/install
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cat $CWD/slack-desc > $PKG/install/slack-desc
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cat $CWD/doinst.sh > $PKG/install/doinst.sh
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cd $PKG
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/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE
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10
graphics/amide/amide.info
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10
graphics/amide/amide.info
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PRGNAM="amide"
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VERSION="1.0.6+20231009_c02babd"
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HOMEPAGE="https://amide.sourceforge.net/"
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DOWNLOAD="https://github.com/ferdymercury/amide/archive/c02babd/amide-c02babd6b660a8d83c7f90eab69bbff34253923d.tar.gz"
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MD5SUM="650f348061896c5efcb1443bc12239bd"
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DOWNLOAD_x86_64=""
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MD5SUM_x86_64=""
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REQUIRES="libgnomecanvas xmedcon dcmtk"
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MAINTAINER="Juan M. Lasca"
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EMAIL="juanmlasca@gmail.com"
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4
graphics/amide/doinst.sh
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4
graphics/amide/doinst.sh
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if [ -x /usr/bin/update-desktop-database ]; then
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/usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
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fi
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19
graphics/amide/slack-desc
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19
graphics/amide/slack-desc
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# HOW TO EDIT THIS FILE:
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# The "handy ruler" below makes it easier to edit a package description.
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# Line up the first '|' above the ':' following the base package name, and
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# the '|' on the right side marks the last column you can put a character in.
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# You must make exactly 11 lines for the formatting to be correct. It's also
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# customary to leave one space after the ':' except on otherwise blank lines.
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|-----handy-ruler------------------------------------------------------|
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amide: amide (Amide's a Medical Imaging Data Examiner)
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amide:
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amide: AMIDE is a competely free tool for viewing, analyzing, and
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amide: registering volumetric medical imaging data sets. It's been written
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amide: on top of GTK+, and runs on any system that supports this toolkit
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amide: (Linux, Windows, Mac OS X, etc.).
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amide:
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amide:
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amide:
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amide: For more information, see: https://amide.sourceforge.net/
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amide:
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