graphics/amide: Added (Medical Imaging Data Examiner).

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Juan M. Lasca 2023-10-29 19:42:50 +07:00 committed by Willy Sudiarto Raharjo
parent 95415c0e1d
commit 8387890360
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GPG key ID: 3F617144D7238786
5 changed files with 202 additions and 0 deletions

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graphics/amide/README Normal file
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AMIDE is a competely free tool for viewing, analyzing, and registering
volumetric medical imaging data sets. It's been written on top of GTK+,
and runs on any system that supports this toolkit (Linux, Windows,
Mac OS X, etc.).
FEATURES:
* Abitrary orientation, thickness, and time period slice viewing of
a data set.
* Thick slabs can be generated by averaging (MPR), taking the
maximum (MIP), or the minimum (MIP).
* Multiple data sets can be loaded and viewed at once.
* Nearest Neighbor and Trilinear interpolation functions
* Zooming
* Black/White,White/Black,Red/Green/Blue Temperature,
Hot Metal/Blue/Green, Spectrum, NIH/UCLA colormaps
* Thresholding: data sets are thresholded independently.
* 3-dimensional ROI's can be drawn directly on the images and
statistics can be generated for these ROI's.
* Imports raw data files (8bit,16bit,32bit,float,etc).
* Imports Acr/Nema 2.0, Analyze (SPM), DICOM 3.0, InterFile3.3,
ECAT 6/7, and Gif87a/89a (using the (X)medcon/libmdc).
* Imports most clinical DICOM files (using the DCMTK library).
* Allows cropping and clearing regions of data sets.
* Anisotropic filtering wizard.
* Saves studies (ROI and Data Set data) as XML data.
* Series of slices can be viewed.
* Fly through movies can be generated as MPEG1 files
* True volume rendering support with the capability of rendering
multiple data sets at a time. Series of renderings can be saved
as MPEG1 movies. Data sets can also be rendered as stereoscopic
image pairs
* Alignment of data sets is supported using fiducial markers.
* A profile tool is included that can calculate gaussian fits and
FWHM's of the generated line profiles.

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#!/bin/bash
# Slackware build script for amide
# Copyright 2023 Juan M. Lasca <juanmlasca@gmail.com>
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
# permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
cd $(dirname $0) ; CWD=$(pwd)
PRGNAM=amide
VERSION=${VERSION:-1.0.6+20231009_c02babd}
COMMIT=c02babd6b660a8d83c7f90eab69bbff34253923d
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
PKGTYPE=${PKGTYPE:-tgz}
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
i?86) ARCH=i586 ;;
arm*) ARCH=arm ;;
*) ARCH=$( uname -m ) ;;
esac
fi
if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
exit 0
fi
TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
if [ "$ARCH" = "i586" ]; then
SLKCFLAGS="-O2 -march=i586 -mtune=i686"
LIBDIRSUFFIX=""
elif [ "$ARCH" = "i686" ]; then
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
LIBDIRSUFFIX=""
elif [ "$ARCH" = "x86_64" ]; then
SLKCFLAGS="-O2 -fPIC"
LIBDIRSUFFIX="64"
elif [ "$ARCH" = "aarch64" ]; then
SLKCFLAGS="-O2 -fPIC"
LIBDIRSUFFIX="64"
else
SLKCFLAGS="-O2"
LIBDIRSUFFIX=""
fi
set -e
rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf $PRGNAM-$COMMIT
tar xvf $CWD/$PRGNAM-$COMMIT.tar.gz
cd $PRGNAM-$COMMIT
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-o -perm 511 \) -exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
intltoolize
libtoolize
touch gtk-doc.make gnome-doc-utils.make
autoreconf -i
CFLAGS="$SLKCFLAGS -Dg_warning=printf" \
CXXFLAGS="$SLKCFLAGS" \
./configure \
--prefix=/usr \
--libdir=/usr/lib${LIBDIRSUFFIX} \
--sysconfdir=/etc \
--localstatedir=/var \
--mandir=/usr/man \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--disable-static \
--build=$ARCH-slackware-linux \
--disable-gnome-vfs \
--disable-doc \
--disable-scrollkeeper
# workaround GTK+-2.0 ABI issue
sed -i '$a\#define g_warning printf' amide_config.h;
make -j1
make -j1 install DESTDIR=$PKG
rm -f $PKG/{,usr/}lib${LIBDIRSUFFIX}/*.la
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
find $PKG/usr/man -type f -exec gzip -9 {} \;
for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
# Correct .desktop file
sed -i '/Encoding=UTF-8/d;s/Graphics;Education;Science;MedicalSoftware;/Graphics;/' \
$PKG/usr/share/applications/amide.desktop
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \
RELEASE_NOTES README.md NEWS AUTHORS \
$PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
mkdir -p $PKG/install
cat $CWD/slack-desc > $PKG/install/slack-desc
cat $CWD/doinst.sh > $PKG/install/doinst.sh
cd $PKG
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE

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graphics/amide/amide.info Normal file
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PRGNAM="amide"
VERSION="1.0.6+20231009_c02babd"
HOMEPAGE="https://amide.sourceforge.net/"
DOWNLOAD="https://github.com/ferdymercury/amide/archive/c02babd/amide-c02babd6b660a8d83c7f90eab69bbff34253923d.tar.gz"
MD5SUM="650f348061896c5efcb1443bc12239bd"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="libgnomecanvas xmedcon dcmtk"
MAINTAINER="Juan M. Lasca"
EMAIL="juanmlasca@gmail.com"

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graphics/amide/doinst.sh Normal file
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if [ -x /usr/bin/update-desktop-database ]; then
/usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
fi

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graphics/amide/slack-desc Normal file
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# HOW TO EDIT THIS FILE:
# The "handy ruler" below makes it easier to edit a package description.
# Line up the first '|' above the ':' following the base package name, and
# the '|' on the right side marks the last column you can put a character in.
# You must make exactly 11 lines for the formatting to be correct. It's also
# customary to leave one space after the ':' except on otherwise blank lines.
|-----handy-ruler------------------------------------------------------|
amide: amide (Amide's a Medical Imaging Data Examiner)
amide:
amide: AMIDE is a competely free tool for viewing, analyzing, and
amide: registering volumetric medical imaging data sets. It's been written
amide: on top of GTK+, and runs on any system that supports this toolkit
amide: (Linux, Windows, Mac OS X, etc.).
amide:
amide:
amide:
amide: For more information, see: https://amide.sourceforge.net/
amide: