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academic/vcftools: Updated for version 0.1.12a.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
parent
284a215b9f
commit
488f7c2161
4 changed files with 20 additions and 16 deletions
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@ -1,15 +1,18 @@
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Description: do not use MAKEFLAGS
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Description: do not use MAKEFLAGS and not MANDIR
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Author: Thorsten Alteholz <debian@alteholz.de>
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Last-Update: 2011-07-03
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Index: vcftools-0.1.7/Makefile
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Last-Update: 2014-04-03
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Index: vcftools_0.1.12/Makefile
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===================================================================
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--- vcftools_0.1.7.org/Makefile 2011-07-04 15:22:33.000000000 +0200
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+++ vcftools_0.1.7/Makefile 2011-07-04 15:22:56.000000000 +0200
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@@ -22,7 +22,7 @@
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--- vcftools_0.1.12.orig/Makefile 2014-04-04 10:37:59.000000000 +0200
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+++ vcftools_0.1.12/Makefile 2014-04-04 10:38:34.000000000 +0200
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@@ -25,9 +25,8 @@
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DIRS = cpp perl
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install:
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@mkdir -p $(BINDIR); mkdir -p $(MODDIR); \
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- @mkdir -p $(BINDIR); mkdir -p $(MODDIR); mkdir -p $(MANDIR); \
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- cp ${PREFIX}/cpp/vcftools.1.gz $(MANDIR); \
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- for dir in $(DIRS); do cd $$dir && $(MAKE) $(MAKEFLAGS) && cd ..; done
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+ @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \
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+ for dir in $(DIRS); do cd $$dir && $(MAKE) && cd ..; done
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clean:
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@ -15,5 +15,5 @@ vcftools: VCF files: validating, merging, comparing and calculate some
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vcftools: basic population genetic statistics.
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vcftools:
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vcftools: Home: http://vcftools.sourceforge.net/
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vcftools: References: /usr/doc/vcftools-0.1.11/References
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vcftools: References: /usr/doc/vcftools-0.1.12a/References
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vcftools:
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@ -2,7 +2,7 @@
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# Slackware build script for vcftools
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# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
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# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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PRGNAM=vcftools
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VERSION=${VERSION:-0.1.11}
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VERSION=${VERSION:-0.1.12a}
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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@ -83,6 +83,9 @@ CPPFLAGS="$SLKCFLAGS" \
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PREFIX=$PKG/usr \
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make install
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# Copy man page
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install -D -m644 cpp/vcftools.1.gz $PKG/usr/man/man1/vcftools.1.gz
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# Copy examples
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mkdir -p $PKG/usr/share/$PRGNAM
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cp -a examples $PKG/usr/share/$PRGNAM
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@ -91,9 +94,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
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| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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cp -a \
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README.txt perl/ChangeLog website/*.pdf \
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$PKG/usr/doc/$PRGNAM-$VERSION
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cp -a README.txt perl/ChangeLog website/*.pdf $PKG/usr/doc/$PRGNAM-$VERSION
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
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@ -1,8 +1,8 @@
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PRGNAM="vcftools"
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VERSION="0.1.11"
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VERSION="0.1.12a"
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HOMEPAGE="http://vcftools.sourceforge.net/"
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DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.11.tar.gz"
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MD5SUM="ddb49e9fa2bfedae36b4dce163adfaa8"
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DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.12a.tar.gz"
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MD5SUM="ca2ab768ed741623263dbe123cac428b"
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DOWNLOAD_x86_64=""
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MD5SUM_x86_64=""
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REQUIRES=""
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