academic/wehi-hackit: Added (Clip a stream of cells).

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Petar Petrov 2016-12-19 06:50:40 +07:00 committed by Willy Sudiarto Raharjo
parent bc0982abdc
commit 38c30e023e
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7 changed files with 104 additions and 0 deletions

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Where it is feared that a flow cytometry data file has been violated,
for example at the start of the file by cells carried over from the
previous sample, or at the end of the file by a nozzle blockage,
Hackit (wehi-hackit) can be used to clip the offending stream of cells
from the file. It may be used also to concatenate the data from a
number of files.

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if [ -x /usr/bin/update-desktop-database ]; then
/usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
fi

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# HOW TO EDIT THIS FILE:
# The "handy ruler" below makes it easier to edit a package description.
# Line up the first '|' above the ':' following the base package name, and
# the '|' on the right side marks the last column you can put a character in.
# You must make exactly 11 lines for the formatting to be correct. It's also
# customary to leave one space after the ':' except on otherwise blank lines.
|-----handy-ruler------------------------------------------------------|
wehi-hackit: wehi-hackit (Clip a stream of cells from flow cytometry files)
wehi-hackit:
wehi-hackit: Where it is feared that a flow cytometry data file has been violated,
wehi-hackit: for example at the start of the file by cells carried over from the
wehi-hackit: previous sample, or at the end of the file by a nozzle blockage,
wehi-hackit: Hackit can be used to clip the offending stream of cells from the
wehi-hackit: file. It may be used also to concatenate the data from a number of
wehi-hackit: files.
wehi-hackit:
wehi-hackit: http://www.frankbattye.com.au/freesoftware.html
wehi-hackit:

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#!/bin/sh
# Slackware build script for wehi-hackit
# Copyright 2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
# permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=wehi-hackit
VERSION=${VERSION:-20050203}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
ARCH=noarch
SRCNAM=Hackit
CWD=$(pwd)
TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
set -e
rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
install -D -m755 $CWD/$SRCNAM.jar $PKG/usr/bin/$PRGNAM.jar
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
# Couldn't find an icon, so I made one myself, from my own data :)
mkdir -p $PKG/usr/share/{applications,pixmaps}
cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
mkdir -p $PKG/install
cat $CWD/slack-desc > $PKG/install/slack-desc
cat $CWD/doinst.sh > $PKG/install/doinst.sh
cd $PKG
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}

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[Desktop Entry]
Type=Application
Exec=java -jar /usr/bin/wehi-hackit.jar
Terminal=false
Name=Flow cytometry Hackit
Icon=wehi-hackit.png
Categories=Education;

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PRGNAM="wehi-hackit"
VERSION="20050203"
HOMEPAGE="http://www.frankbattye.com.au/freesoftware.html"
DOWNLOAD="http://www.frankbattye.com.au/downloads/Hackit.jar"
MD5SUM="1b498994d569b147a461b698633078e1"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"
MAINTAINER="Petar Petrov"
EMAIL="slackalaxy@gmail.com"

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