From 384c360ffee0e55ffeb7c92e975ac7343c1dec55 Mon Sep 17 00:00:00 2001
From: brobr <sborg63@disroot.org>
Date: Mon, 29 Apr 2024 23:03:11 +0100
Subject: [PATCH] academic/samtools:Upgrade to 1.20

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
---
 academic/samtools/samtools.SlackBuild | 12 +++++-------
 academic/samtools/samtools.info       |  6 +++---
 2 files changed, 8 insertions(+), 10 deletions(-)

diff --git a/academic/samtools/samtools.SlackBuild b/academic/samtools/samtools.SlackBuild
index 7efbaf3288..4f39dce0d0 100644
--- a/academic/samtools/samtools.SlackBuild
+++ b/academic/samtools/samtools.SlackBuild
@@ -25,14 +25,14 @@
 cd $(dirname $0) ; CWD=$(pwd)
 
 PRGNAM=samtools
-VERSION=${VERSION:-1.19.2}
-HTSLIBV=${HTSLIBV:-1.19.1}
+VERSION=${VERSION:-1.20}
+HTSLIBV=${HTSLIBV:-1.20}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 PKGTYPE=${PKGTYPE:-tgz}
 
-# Some applications still rely on the legacy samtools API instead of using htslib
-# exclusively, in that case, install the headers in /usr/include/bam and the static
+# Some applications still rely on the legacy samtools API instead of using htslib 
+# exclusively, in that case, install the headers in /usr/include/bam and the static 
 # libbam library as well by declaring (uncommenting):
 #SAMLIB="yes"
 # and commenting out:
@@ -122,9 +122,7 @@ find $PKG/usr/man -type f -exec gzip -9 {} \;
 for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a \
-  AUTHORS LICENSE README NEWS.md examples \
-  $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a AUTHORS LICENSE README NEWS.md examples $PKG/usr/doc/$PRGNAM-$VERSION
 cp $CWD/README $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 
diff --git a/academic/samtools/samtools.info b/academic/samtools/samtools.info
index eef9473b1e..40df7ba546 100644
--- a/academic/samtools/samtools.info
+++ b/academic/samtools/samtools.info
@@ -1,8 +1,8 @@
 PRGNAM="samtools"
-VERSION="1.19.2"
+VERSION="1.20"
 HOMEPAGE="http://www.htslib.org"
-DOWNLOAD="https://github.com/samtools/samtools/releases/download/1.19.2/samtools-1.19.2.tar.bz2"
-MD5SUM="318492d95f5d8cef697442d1be996b77"
+DOWNLOAD="https://github.com/samtools/samtools/releases/download/1.20/samtools-1.20.tar.bz2"
+MD5SUM="e33f429b57324a55e5cbe0ef9f3a094e"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES="htslib"