academic/bpp1.9-seq: Removed (ftb + no active maintainer).

Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>

academic/bpp1.9-seq/README

@@ -1,10 +0,0 @@
-Bio++ is a set of C++ libraries for Bioinformatics, including sequence
-analysis, phylogenetics, molecular evolution and population genetics.
-Bio++ is Object Oriented and is designed to be both easy to use and
-computer efficient. Bio++ intends to help programmers to write
-computer expensive programs, by providing them a set of re-usable
-tools.
-
-This contains the Bio++ 1.9 (April 2010) Seq Library. It can be
-installed along the current Bio++ suite libraries, however they better
-not be present at compile time.

academic/bpp1.9-seq/bpp1.9-seq.SlackBuild

@@ -1,120 +0,0 @@
-#!/bin/bash
-
-# Slackware build script for bpp1.9-seq
-
-# Copyright 2020-2021 Petar Petrov slackalaxy@gmail.com
-# All rights reserved.
-#
-# Redistribution and use of this script, with or without modification, is
-# permitted provided that the following conditions are met:
-#
-# 1. Redistributions of this script must retain the above copyright
-#    notice, this list of conditions and the following disclaimer.
-#
-#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
-#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
-#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-cd $(dirname $0) ; CWD=$(pwd)
-
-PRGNAM=bpp1.9-seq
-SRCNAM=bpp-seq
-VERSION=${VERSION:-1.7.0}
-BUILD=${BUILD:-1}
-TAG=${TAG:-_SBo}
-PKGTYPE=${PKGTYPE:-tgz}
-
-if [ -z "$ARCH" ]; then
-  case "$( uname -m )" in
-    i?86) ARCH=i586 ;;
-    arm*) ARCH=arm ;;
-       *) ARCH=$( uname -m ) ;;
-  esac
-fi
-
-# If the variable PRINT_PACKAGE_NAME is set, then this script will report what
-# the name of the created package would be, and then exit. This information
-# could be useful to other scripts.
-if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
-  echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
-  exit 0
-fi
-
-TMP=${TMP:-/tmp/SBo}
-PKG=$TMP/package-$PRGNAM
-OUTPUT=${OUTPUT:-/tmp}
-
-if [ "$ARCH" = "i586" ]; then
-  SLKCFLAGS="-O2 -march=i586 -mtune=i686"
-  LIBDIRSUFFIX=""
-elif [ "$ARCH" = "i686" ]; then
-  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
-  LIBDIRSUFFIX=""
-elif [ "$ARCH" = "x86_64" ]; then
-  SLKCFLAGS="-O2 -fPIC"
-  LIBDIRSUFFIX="64"
-else
-  SLKCFLAGS="-O2"
-  LIBDIRSUFFIX=""
-fi
-
-# This is needed for vCAPS to find its libraries at runtime. Thanks Urchlay!
-LIBDIRPATH="-Wl,-rpath,/usr/lib${LIBDIRSUFFIX}/Bpp1.9"
-
-set -e
-
-rm -rf $PKG
-mkdir -p $TMP $PKG $OUTPUT
-cd $TMP
-rm -rf $SRCNAM-$VERSION
-tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
-cd $SRCNAM-$VERSION
-chown -R root:root .
-find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-  -o -perm 511 \) -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-
-# Use custom install place, so libs can coexist with latest bpp
-export PATH="/usr/lib${LIBDIRSUFFIX}/Bpp1.9/:$PATH"
-sed -i "s:/lib/:/lib${LIBDIRSUFFIX}/Bpp1.9/:g" Seq.spec
-
-mkdir -p build
-cd build
-  cmake \
-    -DCMAKE_CXX_FLAGS:STRING="$SLKCFLAGS $LIBDIRPATH" \
-    -DCMAKE_INSTALL_PREFIX=/usr \
-    -DCMAKE_BUILD_TYPE=Release ..
-
-  sed -i "s:/lib/:/lib${LIBDIRSUFFIX}/Bpp1.9/:g" Seq/cmake_install.cmake
-  sed -i "s:/lib\b:/lib${LIBDIRSUFFIX}/Bpp1.9:g" Seq/cmake_install.cmake
-
-  make
-  make DESTDIR=$PKG install
-cd ..
-
-# Remove static lib
-rm -f $PKG/usr/lib64/Bpp1.9/libbpp-seq.a
-
-find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
-  | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
-
-mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a \
-  AUTHORS ChangeLog COPYING INSTALL \
-  $PKG/usr/doc/$PRGNAM-$VERSION
-cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
-
-mkdir -p $PKG/install
-cat $CWD/slack-desc > $PKG/install/slack-desc
-
-cd $PKG
-/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE

academic/bpp1.9-seq/bpp1.9-seq.info

@@ -1,10 +0,0 @@
-PRGNAM="bpp1.9-seq"
-VERSION="1.7.0"
-HOMEPAGE="http://biopp.univ-montp2.fr/"
-DOWNLOAD="http://biopp.univ-montp2.fr/repos/sources/bpp-seq-1.7.0.tar.gz"
-MD5SUM="4256293637ac4131c0d030f5265b8b8b"
-DOWNLOAD_x86_64=""
-MD5SUM_x86_64=""
-REQUIRES="bpp1.9-numcalc"
-MAINTAINER="Petar Petrov"
-EMAIL="slackalaxy@gmail.com"

academic/bpp1.9-seq/slack-desc

@@ -1,19 +0,0 @@
-# HOW TO EDIT THIS FILE:
-# The "handy ruler" below makes it easier to edit a package description.
-# Line up the first '|' above the ':' following the base package name, and
-# the '|' on the right side marks the last column you can put a character in.
-# You must make exactly 11 lines for the formatting to be correct.  It's also
-# customary to leave one space after the ':' except on otherwise blank lines.
-
-          |-----handy-ruler------------------------------------------------------|
-bpp1.9-seq: bpp1.9-seq (Bio++ 1.9 Seq Library)
-bpp1.9-seq:
-bpp1.9-seq: Contains the Bio++ 1.9 Seq Library.
-bpp1.9-seq:
-bpp1.9-seq:
-bpp1.9-seq:
-bpp1.9-seq:
-bpp1.9-seq:
-bpp1.9-seq:
-bpp1.9-seq:
-bpp1.9-seq: