From 26da2395a38cc0e6df8c2722a8d97623d9c2eb07 Mon Sep 17 00:00:00 2001
From: Petar Petrov <slackalaxy@gmail.com>
Date: Fri, 12 May 2023 00:55:54 +0100
Subject: [PATCH] academic/hyphy: Updated for version 2.5.50.

Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
---
 academic/hyphy/README           | 4 ++++
 academic/hyphy/hyphy.SlackBuild | 7 ++-----
 academic/hyphy/hyphy.info       | 6 +++---
 3 files changed, 9 insertions(+), 8 deletions(-)

diff --git a/academic/hyphy/README b/academic/hyphy/README
index 4405702da1..2aca901dff 100644
--- a/academic/hyphy/README
+++ b/academic/hyphy/README
@@ -51,6 +51,10 @@ NOTE!
 The script builds two executables: HYPHYMP, which uses pthreads to do
 multiprocessing and HYPHYMPI, which uses openmpi (hence the dependency).
 
+HyPhy Vision
+To visualise your results produced offline, you can use HyPhy Vision:
+http://vision.hyphy.org/
+
 Citing
 Sergei L. Kosakovsky Pond, Simon D. W. Frost and Spencer V. Muse (2005)
 HyPhy: hypothesis testing using phylogenies.
diff --git a/academic/hyphy/hyphy.SlackBuild b/academic/hyphy/hyphy.SlackBuild
index 42a522f74b..aa4484c239 100644
--- a/academic/hyphy/hyphy.SlackBuild
+++ b/academic/hyphy/hyphy.SlackBuild
@@ -25,7 +25,7 @@
 cd $(dirname $0) ; CWD=$(pwd)
 
 PRGNAM=hyphy
-VERSION=${VERSION:-2.5.49}
+VERSION=${VERSION:-2.5.50}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 PKGTYPE=${PKGTYPE:-tgz}
@@ -100,10 +100,7 @@ cd build
     -DCMAKE_INSTALL_PREFIX=/usr \
     -DCMAKE_BUILD_TYPE=Release ..
 
-# It is actually not necessary anymore to specify here MP and HYPHYMPI,
-# as 'make' alone will attempt to build them both. However, let's leave
-# them, just in case.
-  make MP HYPHYMPI
+  make HYPHYMPI
   make install DESTDIR=$PKG
 cd ..
 
diff --git a/academic/hyphy/hyphy.info b/academic/hyphy/hyphy.info
index a9492a99cb..b35f93b3bb 100644
--- a/academic/hyphy/hyphy.info
+++ b/academic/hyphy/hyphy.info
@@ -1,8 +1,8 @@
 PRGNAM="hyphy"
-VERSION="2.5.49"
+VERSION="2.5.50"
 HOMEPAGE="https://veg.github.io/hyphy-site/"
-DOWNLOAD="https://github.com/veg/hyphy/archive/2.5.49/hyphy-2.5.49.tar.gz"
-MD5SUM="cdb9283d628d0cd9baddaa89072839c1"
+DOWNLOAD="https://github.com/veg/hyphy/archive/2.5.50/hyphy-2.5.50.tar.gz"
+MD5SUM="c4e02d58025f4d1f129cc2b0c2dc97dd"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES="openmpi"