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academic/STAR: Updated for version 2.7.0a.

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Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
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Rob van Nues 2019-01-27 12:05:09 -06:00 committed by Willy Sudiarto Raharjo
parent 8ff4ce2fdd
commit 18da22d1e2
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4 changed files with 13 additions and 10 deletions
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5
academic/STAR/README
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@ -2,6 +2,9 @@ STAR aligns short and long RNA-seq reads to a reference genome using
uncompressed suffix arrays, resulting in fast, accurate mapping.
STAR is capable of unbiased de novo detection of canonical splice
junctions, can discover non-canonical splices and chimeric (fusion)
transcripts and can map full-length RNA sequences.
transcripts and can map full-length RNA sequences. Comes with
STARsolo for: mapping, demultiplexing and gene quantification for
single cell RNA-seq (See STARmanual).
Reference: https://www.ncbi.nlm.nih.gov/pubmed/23104886

4
academic/STAR/STAR.SlackBuild
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@ -2,7 +2,7 @@
# Slackware build script for STAR
# Copyright 2018 Rob van Nues
# Copyright 2018-2019 Rob van Nues
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=STAR
VERSION=${VERSION:-2.6.1d}
VERSION=${VERSION:-2.7.0a}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}

6
academic/STAR/STAR.info
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@ -1,10 +1,10 @@
PRGNAM="STAR"
VERSION="2.6.1d"
VERSION="2.7.0a"
HOMEPAGE="https://github.com/alexdobin/STAR"
DOWNLOAD="UNSUPPORTED"
MD5SUM=""
DOWNLOAD_x86_64="https://github.com/alexdobin/STAR/archive/2.6.1d/STAR-2.6.1d.tar.gz"
MD5SUM_x86_64="c74965ee85f551641175b63f8a26a6f5"
DOWNLOAD_x86_64="https://github.com/alexdobin/STAR/archive/2.7.0a/STAR-2.7.0a.tar.gz"
MD5SUM_x86_64="318f0ef28bb85f3a2306f4b0796e0cf5"
REQUIRES=""
MAINTAINER="Rob van Nues"
EMAIL="sborg63@disroot.org"

8
academic/STAR/slack-desc
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@ -9,10 +9,10 @@
STAR: STAR (Spliced Transcripts Alignment to a Reference)
STAR:
STAR: STAR aligns short and long RNA-seq reads to a reference genome using
STAR: uncompressed suffix arrays, resulting in fast, accurate mapping.
STAR: STAR is capable of unbiased de novo detection of canonical junctions,
STAR: can discover non-canonical splices and chimeric (fusion) transcripts
STAR: and can map full-length RNA sequences.
STAR: uncompressed suffix arrays, resulting in fast, accurate mapping. STAR
STAR: is capable of unbiased de novo detection of canonical junctions, can
STAR: discover non-canonical splices and chimeric transcripts, can map full-
STAR: length RNA sequences and can be used for single cell RNA-seq mapping.
STAR:
STAR: https://github.com/alexdobin/STAR
STAR: Reference: https://www.ncbi.nlm.nih.gov/pubmed/23104886