academic/sage-bin: Updated for version 9.4

Signed-off-by: Duncan Roe <duncan_roe@optusnet.com.au>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Duncan Roe 2022-02-10 09:35:46 +11:00 committed by Willy Sudiarto Raharjo
parent c60b44cb9e
commit 166bf5b0eb
No known key found for this signature in database
GPG key ID: 3F617144D7238786
4 changed files with 283 additions and 8 deletions

258
academic/sage-bin/9.4.patch Normal file
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@ -0,0 +1,258 @@
--- opt/SageMath/local/lib/python3.9/site-packages/sage/combinat/posets/poset_examples.py.bu 2021-08-22 19:12:42.000000000 +1000
+++ opt/SageMath/local/lib/python3.9/site-packages/sage/combinat/posets/poset_examples.py 2022-01-02 13:10:42.447658457 +1100
@@ -155,7 +155,7 @@
@staticmethod
def BooleanLattice(n, facade=None, use_subsets=False):
- """
+ r"""
Return the Boolean lattice containing `2^n` elements.
- ``n`` -- integer; number of elements will be `2^n`
--- opt/SageMath/local/lib/python3.9/site-packages/traitlets/config/loader.py.bu 2021-08-22 22:00:01.000000000 +1000
+++ opt/SageMath/local/lib/python3.9/site-packages/traitlets/config/loader.py 2022-01-11 11:39:00.600018177 +1100
@@ -792,7 +792,7 @@
nargs = '?'
else:
nargs = None
- if len(key) is 1:
+ if len(key) == 1:
paa('-'+key, '--'+key, type=text_type, dest=value, nargs=nargs)
else:
paa('--'+key, type=text_type, dest=value, nargs=nargs)
@@ -801,7 +801,7 @@
#
self.alias_flags[self.aliases[key]] = value
continue
- if len(key) is 1:
+ if len(key) == 1:
paa('-'+key, '--'+key, action='append_const', dest='_flags', const=value)
else:
paa('--'+key, action='append_const', dest='_flags', const=value)
--- opt/SageMath/local/lib/python3.9/site-packages/psutil/_pslinux.py.bu 2021-08-22 21:58:18.000000000 +1000
+++ opt/SageMath/local/lib/python3.9/site-packages/psutil/_pslinux.py 2022-01-11 12:14:46.007349527 +1100
@@ -548,7 +548,7 @@
# https://github.com/giampaolo/psutil/issues/200
# try to parse /proc/stat as a last resort
if num == 0:
- search = re.compile('cpu\d')
+ search = re.compile(r'cpu\d')
with open_text('%s/stat' % get_procfs_path()) as f:
for line in f:
line = line.split(' ')[0]
@@ -1465,9 +1465,9 @@
@wrap_exceptions
def memory_full_info(
self,
- _private_re=re.compile(b"Private.*:\s+(\d+)"),
- _pss_re=re.compile(b"Pss.*:\s+(\d+)"),
- _swap_re=re.compile(b"Swap.*:\s+(\d+)")):
+ _private_re=re.compile(br"Private.*:\s+(\d+)"),
+ _pss_re=re.compile(br"Pss.*:\s+(\d+)"),
+ _swap_re=re.compile(br"Swap.*:\s+(\d+)")):
basic_mem = self.memory_info()
# Note: using 3 regexes is faster than reading the file
# line by line.
@@ -1580,7 +1580,7 @@
raise
@wrap_exceptions
- def num_ctx_switches(self, _ctxsw_re=re.compile(b'ctxt_switches:\t(\d+)')):
+ def num_ctx_switches(self, _ctxsw_re=re.compile(br'ctxt_switches:\t(\d+)')):
data = self._read_status_file()
ctxsw = _ctxsw_re.findall(data)
if not ctxsw:
@@ -1593,7 +1593,7 @@
return _common.pctxsw(int(ctxsw[0]), int(ctxsw[1]))
@wrap_exceptions
- def num_threads(self, _num_threads_re=re.compile(b'Threads:\t(\d+)')):
+ def num_threads(self, _num_threads_re=re.compile(br'Threads:\t(\d+)')):
# Note: on Python 3 using a re is faster than iterating over file
# line by line. On Python 2 is the exact opposite, and iterating
# over a file on Python 3 is slower than on Python 2.
@@ -1649,7 +1649,7 @@
return cext.proc_cpu_affinity_get(self.pid)
def _get_eligible_cpus(
- self, _re=re.compile(b"Cpus_allowed_list:\t(\d+)-(\d+)")):
+ self, _re=re.compile(br"Cpus_allowed_list:\t(\d+)-(\d+)")):
# See: https://github.com/giampaolo/psutil/issues/956
data = self._read_status_file()
match = _re.findall(data)
@@ -1811,13 +1811,13 @@
return int(self._parse_stat_file()[2])
@wrap_exceptions
- def uids(self, _uids_re=re.compile(b'Uid:\t(\d+)\t(\d+)\t(\d+)')):
+ def uids(self, _uids_re=re.compile(br'Uid:\t(\d+)\t(\d+)\t(\d+)')):
data = self._read_status_file()
real, effective, saved = _uids_re.findall(data)[0]
return _common.puids(int(real), int(effective), int(saved))
@wrap_exceptions
- def gids(self, _gids_re=re.compile(b'Gid:\t(\d+)\t(\d+)\t(\d+)')):
+ def gids(self, _gids_re=re.compile(br'Gid:\t(\d+)\t(\d+)\t(\d+)')):
data = self._read_status_file()
real, effective, saved = _gids_re.findall(data)[0]
return _common.pgids(int(real), int(effective), int(saved))
./opt/SageMath/local/lib/python3.9/site-packages/sage/symbolic/RCS
diff -u -r1.1 expression_conversions.py
--- opt/SageMath/local/lib/python3.9/site-packages/sage/symbolic/expression_conversions.py 2021/08/22 09:12:43 1.1
+++ opt/SageMath/local/lib/python3.9/site-packages/sage/symbolic/expression_conversions.py 2022/01/28 02:07:09
@@ -969,7 +969,7 @@
super(FriCASConverter, self).__init__(sage.interfaces.fricas.fricas)
def pyobject(self, ex, obj):
- """
+ r"""
Return a string which, when evaluated by FriCAS, returns the
object as an expression.
./opt/SageMath/local/lib/python3.9/site-packages/IPython/core/RCS
diff -u -r1.1 oinspect.py
./opt/SageMath/local/lib/python3.9/site-packages/requests/RCS
diff -u -r1.1 api.py
--- opt/SageMath/local/lib/python3.9/site-packages/requests/api.py 2021/08/22 11:52:24 1.1
+++ opt/SageMath/local/lib/python3.9/site-packages/requests/api.py 2022/01/28 00:49:42
@@ -57,7 +57,7 @@
def get(url, params=None, **kwargs):
- """Sends a GET request.
+ r"""Sends a GET request.
:param url: URL for the new :class:`Request` object.
:param params: (optional) Dictionary or bytes to be sent in the query string for the :class:`Request`.
@@ -71,7 +71,7 @@
def options(url, **kwargs):
- """Sends a OPTIONS request.
+ r"""Sends a OPTIONS request.
:param url: URL for the new :class:`Request` object.
:param \*\*kwargs: Optional arguments that ``request`` takes.
@@ -84,7 +84,7 @@
def head(url, **kwargs):
- """Sends a HEAD request.
+ r"""Sends a HEAD request.
:param url: URL for the new :class:`Request` object.
:param \*\*kwargs: Optional arguments that ``request`` takes.
@@ -97,7 +97,7 @@
def post(url, data=None, json=None, **kwargs):
- """Sends a POST request.
+ r"""Sends a POST request.
:param url: URL for the new :class:`Request` object.
:param data: (optional) Dictionary, bytes, or file-like object to send in the body of the :class:`Request`.
@@ -111,7 +111,7 @@
def put(url, data=None, **kwargs):
- """Sends a PUT request.
+ r"""Sends a PUT request.
:param url: URL for the new :class:`Request` object.
:param data: (optional) Dictionary, bytes, or file-like object to send in the body of the :class:`Request`.
@@ -125,7 +125,7 @@
def patch(url, data=None, **kwargs):
- """Sends a PATCH request.
+ r"""Sends a PATCH request.
:param url: URL for the new :class:`Request` object.
:param data: (optional) Dictionary, bytes, or file-like object to send in the body of the :class:`Request`.
@@ -139,7 +139,7 @@
def delete(url, **kwargs):
- """Sends a DELETE request.
+ r"""Sends a DELETE request.
:param url: URL for the new :class:`Request` object.
:param \*\*kwargs: Optional arguments that ``request`` takes.
diff -u -r1.1 models.py
--- opt/SageMath/local/lib/python3.9/site-packages/requests/models.py 2021/08/22 11:52:24 1.1
+++ opt/SageMath/local/lib/python3.9/site-packages/requests/models.py 2022/01/28 00:45:51
@@ -840,7 +840,7 @@
return content
def json(self, **kwargs):
- """Returns the json-encoded content of a response, if any.
+ r"""Returns the json-encoded content of a response, if any.
:param \*\*kwargs: Optional arguments that ``json.loads`` takes.
:raises ValueError: If the response body does not contain valid json.
diff -u -r1.1 sessions.py
--- opt/SageMath/local/lib/python3.9/site-packages/requests/sessions.py 2021/08/22 11:52:24 1.1
+++ opt/SageMath/local/lib/python3.9/site-packages/requests/sessions.py 2022/01/28 01:00:24
@@ -490,7 +490,7 @@
return resp
def get(self, url, **kwargs):
- """Sends a GET request. Returns :class:`Response` object.
+ r"""Sends a GET request. Returns :class:`Response` object.
:param url: URL for the new :class:`Request` object.
:param \*\*kwargs: Optional arguments that ``request`` takes.
@@ -501,7 +501,7 @@
return self.request('GET', url, **kwargs)
def options(self, url, **kwargs):
- """Sends a OPTIONS request. Returns :class:`Response` object.
+ r"""Sends a OPTIONS request. Returns :class:`Response` object.
:param url: URL for the new :class:`Request` object.
:param \*\*kwargs: Optional arguments that ``request`` takes.
@@ -512,7 +512,7 @@
return self.request('OPTIONS', url, **kwargs)
def head(self, url, **kwargs):
- """Sends a HEAD request. Returns :class:`Response` object.
+ r"""Sends a HEAD request. Returns :class:`Response` object.
:param url: URL for the new :class:`Request` object.
:param \*\*kwargs: Optional arguments that ``request`` takes.
@@ -523,7 +523,7 @@
return self.request('HEAD', url, **kwargs)
def post(self, url, data=None, json=None, **kwargs):
- """Sends a POST request. Returns :class:`Response` object.
+ r"""Sends a POST request. Returns :class:`Response` object.
:param url: URL for the new :class:`Request` object.
:param data: (optional) Dictionary, bytes, or file-like object to send in the body of the :class:`Request`.
@@ -535,7 +535,7 @@
return self.request('POST', url, data=data, json=json, **kwargs)
def put(self, url, data=None, **kwargs):
- """Sends a PUT request. Returns :class:`Response` object.
+ r"""Sends a PUT request. Returns :class:`Response` object.
:param url: URL for the new :class:`Request` object.
:param data: (optional) Dictionary, bytes, or file-like object to send in the body of the :class:`Request`.
@@ -546,7 +546,7 @@
return self.request('PUT', url, data=data, **kwargs)
def patch(self, url, data=None, **kwargs):
- """Sends a PATCH request. Returns :class:`Response` object.
+ r"""Sends a PATCH request. Returns :class:`Response` object.
:param url: URL for the new :class:`Request` object.
:param data: (optional) Dictionary, bytes, or file-like object to send in the body of the :class:`Request`.
@@ -557,7 +557,7 @@
return self.request('PATCH', url, data=data, **kwargs)
def delete(self, url, **kwargs):
- """Sends a DELETE request. Returns :class:`Response` object.
+ r"""Sends a DELETE request. Returns :class:`Response` object.
:param url: URL for the new :class:`Request` object.
:param \*\*kwargs: Optional arguments that ``request`` takes.

6
academic/sage-bin/9.4_sh Normal file
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@ -0,0 +1,6 @@
cp -a opt/SageMath/local/lib/python3.9/site-packages/sage/combinat/posets/poset_examples.py opt/SageMath/src/sage/combinat/posets
cp -a opt/SageMath/local/lib/python3.9/site-packages/sage/combinat/posets/poset_examples.py opt/SageMath/pkgs/sagemath-standard/build/lib.linux-x86_64-3.9/sage/combinat/posets
tar xf $CWD/debian_binaries-11.2.tar.xz -U -C opt/SageMath/local/lib64/gcc/x86_64-pc-linux-gnu/10.3.0
tar xf $CWD/debian_libraries-11.2.tar.xz -U -C opt/SageMath/local/lib
mkdir -p usr/lib64
mv opt/SageMath/local/lib/libbrotlicommon.so* usr/lib64/

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@ -25,11 +25,13 @@
cd $(dirname $0) ; CWD=$(pwd)
PRGNAM=sage-bin
VERSION=${VERSION:-8.3}
DEBVERSION=${DEBVERSION:-9}
VERSION=${VERSION:-9.4}
DEBVERSION=${DEBVERSION:-11}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
PKGTYPE=${PKGTYPE:-tgz}
SLK_VERSION=${SLK_VERSION:-$(cat /etc/slackware-version|cut -d' ' -f2)}
[ $SLK_VERSION = 14.2 ] && PYTHON=python || PYTHON=python2
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
@ -63,6 +65,8 @@ mkdir -p $TMP $PKG $OUTPUT
cd $PKG
mkdir root proc opt
tar xvf $CWD/sage-$VERSION-Debian_GNU_Linux_$DEBVERSION-$ARCH.tar.bz2 -C $PKG/opt
[ ! -r $CWD/$VERSION.patch ] || patch -p0 < $CWD/$VERSION.patch
[ ! -r $CWD/${VERSION}_sh ] || . $CWD/${VERSION}_sh
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
@ -71,8 +75,9 @@ find -L . \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
mkchroot .
addchroot . python sed util-linux
addchroot . $PYTHON sed util-linux
chroot . <<////
export SAGE_BANNER=bare
mount -t proc proc proc
opt/SageMath/sage < /dev/null # Run sage patch system
umount proc
@ -84,6 +89,7 @@ rm -rf Tools bin dev etc lib64 proc root sbin usr
# and other junk
rm -rf $PKG/opt/SageMath/.git
mkdir -p $PKG/etc/profile.d
install -D -m0755 $CWD/profile.d/sage.sh $PKG/etc/profile.d
install -D -m0755 $CWD/profile.d/sage.csh $PKG/etc/profile.d
@ -103,8 +109,9 @@ for res in 16x16 32x32 64x64 128x128 ; do
$PKG/usr/share/icons/hicolor/$res/mimetypes
done
find $PKG/opt/SageMath/local/share/man -type f -exec gzip -9 {} \;
for i in $( find $PKG/opt/SageMath/local/share/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
# Some man pages and their symlinks are already gzipped
find $PKG/opt/SageMath/local/share/man -type f ! -name '*.gz' -exec gzip -9 {} \;
for i in $( find $PKG/opt/SageMath/local/share/man -type l ! -name '*.gz' ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a opt/SageMath/*.{md,txt} $PKG/usr/doc/$PRGNAM-$VERSION

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@ -1,10 +1,14 @@
PRGNAM="sage-bin"
VERSION="8.3"
VERSION="9.4"
HOMEPAGE="http://www.sagemath.org"
DOWNLOAD="UNSUPPORTED"
MD5SUM=""
DOWNLOAD_x86_64="http://mirrors.mit.edu/sage/linux/64bit/sage-8.3-Debian_GNU_Linux_9-x86_64.tar.bz2"
MD5SUM_x86_64="a97ff237de39d74faedc06b9f4e1fbcc"
DOWNLOAD_x86_64="http://mirrors.mit.edu/sage/linux/64bit/sage-9.4-Debian_GNU_Linux_11-x86_64.tar.bz2 \
https://sourceforge.net/projects/slackbuildsdirectlinks/files/sage-bin/debian_binaries-11.2.tar.xz \
https://sourceforge.net/projects/slackbuildsdirectlinks/files/sage-bin/debian_libraries-11.2.tar.xz \
MD5SUM_x86_64="3128ef3530f514932cabcaf62b78030a \
dc0f1b19c9b73821865599e1cefe66b6 \
9380db91d6afbbc4e5a23ba13553d616"
REQUIRES="mkchroot"
MAINTAINER="Duncan Roe"
EMAIL="duncan_roe@optusnet.com.au"