From 15f3312a7ef3a6bd36ac229bdf25c4a61c774b8b Mon Sep 17 00:00:00 2001
From: Petar Petrov <slackalaxy@gmail.com>
Date: Sun, 5 Jan 2020 18:28:32 -0600
Subject: [PATCH] academic/RepeatMasker: Updated for version 4.1.0.

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
---
 academic/RepeatMasker/README                  | 2 +-
 academic/RepeatMasker/RepeatMasker.SlackBuild | 9 ++++-----
 academic/RepeatMasker/RepeatMasker.info       | 6 +++---
 3 files changed, 8 insertions(+), 9 deletions(-)

diff --git a/academic/RepeatMasker/README b/academic/RepeatMasker/README
index a62062fa85..536b0897a5 100644
--- a/academic/RepeatMasker/README
+++ b/academic/RepeatMasker/README
@@ -20,7 +20,7 @@ supports Dfam (profile HMM library derived from Repbase sequences) and
 Repbase, a service of the Genetic Information Research Institute.
 
 WARNING!
-Due to the bundled databases, the installed size of this is 1.8 GiB!
+Due to the bundled databases, the installed size of this is 2.1 GB!
 
 NOTE!
 The package is installed in /opt. After install go fo /opt/RepeatMasker
diff --git a/academic/RepeatMasker/RepeatMasker.SlackBuild b/academic/RepeatMasker/RepeatMasker.SlackBuild
index 48aa2372d3..b94763c2a8 100644
--- a/academic/RepeatMasker/RepeatMasker.SlackBuild
+++ b/academic/RepeatMasker/RepeatMasker.SlackBuild
@@ -2,7 +2,7 @@
 
 # Slackware build script for RepeatMasker
 
-# Copyright 2018-2019 Petar Petrov slackalaxy@gmail.com
+# Copyright 2018-2020 Petar Petrov slackalaxy@gmail.com
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -23,11 +23,10 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=RepeatMasker
-VERSION=${VERSION:-4.0.9_p2}
+VERSION=${VERSION:-4.1.0}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
-SRCVER=${SRCVER:-4-0-9-p2}
 ARCH=noarch
 
 CWD=$(pwd)
@@ -42,7 +41,7 @@ rm -rf $PKG
 mkdir -p $TMP $PKG $OUTPUT
 cd $TMP
 rm -rf $PRGNAM
-tar xvf $CWD/$PRGNAM-open-$SRCVER.tar.gz
+tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
 cd $PRGNAM
 chown -R root:root .
 find -L . \
@@ -67,7 +66,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
 # Better just copy these and not move them from their original dir
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
 cp -a \
-  bluegrad.jpg daterepeats.help HTMLAnnotHeader.html INSTALL LICENSE README.md repeatmasker.help \
+  bluegrad.jpg daterepeats.help HTMLAnnotHeader.html INSTALL LICENSE README.md repeatmasker.help ReleaseNotes \
   $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 cat $CWD/README.SLACKWARE > $PKG/usr/doc/$PRGNAM-$VERSION/README.SLACKWARE
diff --git a/academic/RepeatMasker/RepeatMasker.info b/academic/RepeatMasker/RepeatMasker.info
index 4f932a9042..62eacca432 100644
--- a/academic/RepeatMasker/RepeatMasker.info
+++ b/academic/RepeatMasker/RepeatMasker.info
@@ -1,8 +1,8 @@
 PRGNAM="RepeatMasker"
-VERSION="4.0.9_p2"
+VERSION="4.1.0"
 HOMEPAGE="http://www.repeatmasker.org/"
-DOWNLOAD="http://www.repeatmasker.org/RepeatMasker-open-4-0-9-p2.tar.gz"
-MD5SUM="6e957630d698422245682701de2ce756"
+DOWNLOAD="http://www.repeatmasker.org/RepeatMasker-4.1.0.tar.gz"
+MD5SUM="936894df2b8291f42afce22a5793b4bf"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES="perl-Text-Soundex trfind HMMER ncbi-rmblastn"