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academic/PhyML: Updated for version 3.3.20190909.

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Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
This commit is contained in:
Petar Petrov 2020-01-05 04:35:29 -06:00 committed by Willy Sudiarto Raharjo
parent b15b607c96
commit 119599e8fc
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GPG key ID: 887B8374D7333381
2 changed files with 15 additions and 26 deletions
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35
academic/PhyML/PhyML.SlackBuild
View file

@ -2,7 +2,7 @@
# Slackware build script for PhyML
# Copyright 2011-2019 Petar Petrov slackalaxy@gmail.com
# Copyright 2011-2020 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -25,11 +25,12 @@
# Thanks to Niels Horn for some handy modifications and corrections.
PRGNAM=PhyML
SRCNAM=$(echo $PRGNAM | tr A-Z a-z)
VERSION=${VERSION:-3.3.20190321}
VERSION=${VERSION:-3.3.20190909}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
SRCNAM=$(echo $PRGNAM | tr A-Z a-z)
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
i?86) ARCH=i586 ;;
@ -86,12 +87,9 @@ find -L . \
--build=$ARCH-slackware-linux
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" src/Makefile
sed -i "/^CFLAGS/s/=/+=/" Makefile
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
make
CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make
make install DESTDIR=$PKG
# This is PhyML MPI. If you do not want it, comment the lines below. Then you do
@ -108,12 +106,9 @@ make install DESTDIR=$PKG
--build=$ARCH-slackware-linux
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" src/Makefile
sed -i "/^CFLAGS/s/=/+=/" Makefile
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
make
CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make
make install DESTDIR=$PKG
# This is Phyrex
@ -129,12 +124,9 @@ make install DESTDIR=$PKG
--build=$ARCH-slackware-linux
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" src/Makefile
sed -i "/^CFLAGS/s/=/+=/" Makefile
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
make
CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make
make install DESTDIR=$PKG
# This is PhyTime
@ -150,12 +142,9 @@ make install DESTDIR=$PKG
--build=$ARCH-slackware-linux
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" src/Makefile
sed -i "/^CFLAGS/s/=/+=/" Makefile
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
make
CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make
make install DESTDIR=$PKG
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \

6
academic/PhyML/PhyML.info
View file

@ -1,8 +1,8 @@
PRGNAM="PhyML"
VERSION="3.3.20190321"
VERSION="3.3.20190909"
HOMEPAGE="https://github.com/stephaneguindon/phyml/"
DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20190321/phyml-3.3.20190321.tar.gz"
MD5SUM="72d375be9c08ec34bedee126bfb141d9"
DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20190909/phyml-3.3.20190909.tar.gz"
MD5SUM="35698ff61c1db57b238f5b2d2cc784b3"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="openmpi"